Information for 15-GGAGCGCCTCTG (Motif 12)


Reverse Opposite:

p-value:1e-8
log p-value:-2.044e+01
Information Content per bp:1.718
Number of Target Sequences with motif40.0
Percentage of Target Sequences with motif1.11%
Number of Background Sequences with motif168.9
Percentage of Background Sequences with motif0.36%
Average Position of motif in Targets277.1 +/- 148.0bp
Average Position of motif in Background279.8 +/- 150.6bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.90
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCCTCTG
CGGAGC-------

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GGAGCGCCTCTG-
TTGGGGGCGCCCCTAG

PB0151.1_Myf6_2/Jaspar

Match Rank:3
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GGAGCGCCTCTG---
GGNGCGNCTGTTNNN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:GGAGCGCCTCTG-
---VBSYGTCTGG

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCGCCTCTG
GGGAGGACNG---

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCTCTG-
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.51
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCTCTG-
ANCGCGCGCCCTTNN

PB0190.1_Tcfap2b_2/Jaspar

Match Rank:8
Score:0.50
Offset:2
Orientation:reverse strand
Alignment:GGAGCGCCTCTG-----
--ANTGCCTGAGGCAAN

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:9
Score:0.50
Offset:-2
Orientation:reverse strand
Alignment:--GGAGCGCCTCTG
CTTGAGTGGCT---

PB0088.1_Tcfap2e_1/Jaspar

Match Rank:10
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:GGAGCGCCTCTG-----
--NTNGCCTCAGGCNNN