Information for 4-AGTGCAAT (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-1.873e+01
Information Content per bp:1.703
Number of Target Sequences with motif1020.0
Percentage of Target Sequences with motif28.40%
Number of Background Sequences with motif11259.2
Percentage of Background Sequences with motif24.26%
Average Position of motif in Targets273.4 +/- 151.3bp
Average Position of motif in Background276.8 +/- 159.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AGTGCAAT---
AGATGCAATCCC

PB0091.1_Zbtb3_1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------AGTGCAAT---
AATCGCACTGCATTCCG

PB0134.1_Hnf4a_2/Jaspar

Match Rank:3
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------AGTGCAAT--
GGCAAAAGTCCAATAA

PB0062.1_Sox12_1/Jaspar

Match Rank:4
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AGTGCAAT--
NTTNAGAACAATTA

MA0122.1_Nkx3-2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGTGCAAT
TTAAGTGGA--

PB0067.1_Sox18_1/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----AGTGCAAT----
NNTNANAACAATTNNA

GFY(?)/Promoter/Homer

Match Rank:7
Score:0.61
Offset:0
Orientation:forward strand
Alignment:AGTGCAAT----
ACTACAATTCCC

PB0072.1_Sox5_1/Jaspar

Match Rank:8
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTGCAAT-----
TTTAGAACAATAAAAT

PB0063.1_Sox13_1/Jaspar

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---AGTGCAAT-----
TTAAGAACAATAAATT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:AGTGCAAT--
RNAACAATGG