Information for 15-CCGTCCGGGA (Motif 16)


Reverse Opposite:

p-value:1e-6
log p-value:-1.568e+01
Information Content per bp:1.704
Number of Target Sequences with motif49.0
Percentage of Target Sequences with motif1.36%
Number of Background Sequences with motif274.0
Percentage of Background Sequences with motif0.59%
Average Position of motif in Targets263.8 +/- 157.1bp
Average Position of motif in Background265.2 +/- 154.1bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.65
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CCGTCCGGGA-
-CTTCCNGGAA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCGTCCGGGA
CTGTCTGG--

PB0085.1_Tcfap2a_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCCGGGA--
NTCCCCTCAGGGANT

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CCGTCCGGGA
VBSYGTCTGG--

MA0028.1_ELK1/Jaspar

Match Rank:5
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CCGTCCGGGA-
-CTTCCGGNNN

PB0087.1_Tcfap2c_1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCCGGGA--
NTCGCCTCAGGCAAT

MA0062.2_GABPA/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CCGTCCGGGA
NCCACTTCCGG--

MF0001.1_ETS_class/Jaspar

Match Rank:8
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CCGTCCGGGA
-CTTCCGGT-

MA0076.2_ELK4/Jaspar

Match Rank:9
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--CCGTCCGGGA
CCACTTCCGGC-

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:CCGTCCGGGA
ACTTCCGGNT