Information for 13-ACGTATAC (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.269e+01
Information Content per bp:1.911
Number of Target Sequences with motif484.0
Percentage of Target Sequences with motif13.47%
Number of Background Sequences with motif5120.0
Percentage of Background Sequences with motif11.03%
Average Position of motif in Targets275.6 +/- 157.9bp
Average Position of motif in Background276.6 +/- 165.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.34
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--ACGTATAC
GCACGTACCC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---ACGTATAC
BGCACGTA---

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:3
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--ACGTATAC
GCACGTAY--

PB0027.1_Gmeb1_1/Jaspar

Match Rank:4
Score:0.67
Offset:-7
Orientation:reverse strand
Alignment:-------ACGTATAC--
NNNTNGTACGTAANNNN

PB0198.1_Zfp128_2/Jaspar

Match Rank:5
Score:0.64
Offset:-5
Orientation:reverse strand
Alignment:-----ACGTATAC-
NNTATANATATACN

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:6
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--ACGTATAC
GCACGTNC--

MA0030.1_FOXF2/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---ACGTATAC---
CAAACGTAAACAAT

PB0106.1_Arid5a_2/Jaspar

Match Rank:8
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----ACGTATAC----
TNNTTTCGTATTNNANN

MA0124.1_NKX3-1/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-ACGTATAC
TAAGTAT--

MA0032.1_FOXC1/Jaspar

Match Rank:10
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---ACGTATAC
GGTAAGTA---