Information for 19-GAGATGAAAT (Motif 21)


Reverse Opposite:

p-value:1e-5
log p-value:-1.184e+01
Information Content per bp:1.946
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif1.50%
Number of Background Sequences with motif361.1
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets311.2 +/- 163.0bp
Average Position of motif in Background264.4 +/- 161.0bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:1
Score:0.68
Offset:-2
Orientation:reverse strand
Alignment:--GAGATGAAAT--------
NDBAGATRWTATCTVNNNNN

PH0124.1_Obox5_1/Jaspar

Match Rank:2
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----GAGATGAAAT---
TAGAGGGATTAAATTTC

MA0037.2_GATA3/Jaspar

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:GAGATGAAAT
-AGATAAGA-

PH0125.1_Obox5_2/Jaspar

Match Rank:4
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----GAGATGAAAT---
NANAGGGATTAATTATN

GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer

Match Rank:5
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGATGAAAT
-AGATAASR-

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:GAGATGAAAT
ATGATGCAAT

MA0151.1_ARID3A/Jaspar

Match Rank:7
Score:0.64
Offset:3
Orientation:forward strand
Alignment:GAGATGAAAT
---ATTAAA-

MA0482.1_Gata4/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GAGATGAAAT
NNGAGATAAGA-

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAGATGAAAT
MTGATGCAAT

MA0036.2_GATA2/Jaspar

Match Rank:10
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GAGATGAAAT---
NCAGATAAGAANNN