Information for 20-GCCCGGCCGC (Motif 22)


Reverse Opposite:

p-value:1e-5
log p-value:-1.177e+01
Information Content per bp:1.945
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif60.7
Percentage of Background Sequences with motif0.13%
Average Position of motif in Targets278.1 +/- 159.4bp
Average Position of motif in Background285.0 +/- 127.7bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)2.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Sp1(Zf)/Promoter/Homer

Match Rank:1
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GCCCGGCCGC-
GGCCCCGCCCCC

MA0516.1_SP2/Jaspar

Match Rank:2
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GCCCGGCCGC-----
GCCCCGCCCCCTCCC

MA0079.3_SP1/Jaspar

Match Rank:3
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GCCCGGCCGC-
GCCCCGCCCCC

POL003.1_GC-box/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GCCCGGCCGC--
NAGCCCCGCCCCCN

PB0164.1_Smad3_2/Jaspar

Match Rank:5
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GCCCGGCCGC----
TACGCCCCGCCACTCTG

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:6
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:GCCCGGCCGC
-CTAGGCCT-

MA0506.1_NRF1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GCCCGGCCGC
TGCGCAGGCGC

MA0599.1_KLF5/Jaspar

Match Rank:8
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GCCCGGCCGC
GCCCCGCCCC

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----GCCCGGCCGC
ACATGCCCGGGCAT

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCCCGGCCGC-----
GGTCCCGCCCCCTTCTC