Information for 16-CAACAACA (Motif 24)


Reverse Opposite:

p-value:1e-4
log p-value:-1.011e+01
Information Content per bp:1.894
Number of Target Sequences with motif735.0
Percentage of Target Sequences with motif20.46%
Number of Background Sequences with motif8301.2
Percentage of Background Sequences with motif17.89%
Average Position of motif in Targets264.6 +/- 157.6bp
Average Position of motif in Background275.7 +/- 162.3bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0122.1_Foxk1_2/Jaspar

Match Rank:1
Score:0.87
Offset:-4
Orientation:forward strand
Alignment:----CAACAACA---
CAAACAACAACACCT

PB0120.1_Foxj1_2/Jaspar

Match Rank:2
Score:0.76
Offset:-6
Orientation:forward strand
Alignment:------CAACAACA-
ATGTCACAACAACAC

MA0133.1_BRCA1/Jaspar

Match Rank:3
Score:0.74
Offset:2
Orientation:forward strand
Alignment:CAACAACA-
--ACAACAC

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-CAACAACA-
RNAACAATGG

PB0123.1_Foxl1_2/Jaspar

Match Rank:5
Score:0.70
Offset:-6
Orientation:forward strand
Alignment:------CAACAACA--
ATATCAAAACAAAACA

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CAACAACA
-AACAAT-

PB0093.1_Zfp105_1/Jaspar

Match Rank:7
Score:0.69
Offset:-3
Orientation:forward strand
Alignment:---CAACAACA----
AACAAACAACAAGAG

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.68
Offset:-5
Orientation:forward strand
Alignment:-----CAACAACA----
TCACGGAACAATAGGTG

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:9
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CAACAACA--
AAACCACANN

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:CAACAACA
NAACAAT-