Information for 17-TWAGTTCW (Motif 25)


Reverse Opposite:

p-value:1e-4
log p-value:-1.004e+01
Information Content per bp:1.819
Number of Target Sequences with motif841.0
Percentage of Target Sequences with motif23.41%
Number of Background Sequences with motif9611.4
Percentage of Background Sequences with motif20.71%
Average Position of motif in Targets292.4 +/- 160.9bp
Average Position of motif in Background278.7 +/- 163.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0512.1_Rxra/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-TWAGTTCW--
CAAAGGTCAGA

MA0017.1_NR2F1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------TWAGTTCW
AGGTTCAAAGGTCA

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----TWAGTTCW----
TCTCAAAGGTCACCTG

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-TWAGTTCW-
TTAAGTGCTT

PB0194.1_Zbtb12_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:TWAGTTCW-------
AGNGTTCTAATGANN

PB0134.1_Hnf4a_2/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----TWAGTTCW----
GGCAAAAGTCCAATAA

MA0114.2_HNF4A/Jaspar

Match Rank:7
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------TWAGTTCW-
NAGNNCAAAGTCCAN

MA0160.1_NR4A2/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TWAGTTCW-
-AAGGTCAC

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----TWAGTTCW----
TCTCAAAGGTCACGAG

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:10
Score:0.62
Offset:-8
Orientation:forward strand
Alignment:--------TWAGTTCW
CANAGNNCAAAGTCCA