Information for 19-TTGACGGG (Motif 26)


Reverse Opposite:

p-value:1e-4
log p-value:-9.293e+00
Information Content per bp:1.870
Number of Target Sequences with motif438.0
Percentage of Target Sequences with motif12.19%
Number of Background Sequences with motif4753.5
Percentage of Background Sequences with motif10.24%
Average Position of motif in Targets259.6 +/- 161.0bp
Average Position of motif in Background272.4 +/- 160.0bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0141.1_Pknox2/Jaspar

Match Rank:1
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---TTGACGGG-----
NNATTGACAGGTGCTT

PH0140.1_Pknox1/Jaspar

Match Rank:2
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTGACGGG-----
GGATTGACAGGTCNTT

PH0105.1_Meis3/Jaspar

Match Rank:3
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTGACGGG-----
GTATTGACAGGTNNTT

PH0104.1_Meis2/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:reverse strand
Alignment:---TTGACGGG-----
NTATTGACAGGTNNTN

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-TTGACGGG-
CCAGACRSVB

PB0164.1_Smad3_2/Jaspar

Match Rank:6
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----TTGACGGG-----
NAGANTGGCGGGGNGNA

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TTGACGGG
CCAGACAG-

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---TTGACGGG-----
NTATTGACAGCTNNTT

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:TTGACGGG
-TGACGT-

MA0498.1_Meis1/Jaspar

Match Rank:10
Score:0.63
Offset:-6
Orientation:reverse strand
Alignment:------TTGACGGG-
NNNTGAGTGACAGCT