Information for 20-ACGCGCGC (Motif 27)


Reverse Opposite:

p-value:1e-4
log p-value:-9.264e+00
Information Content per bp:1.616
Number of Target Sequences with motif232.0
Percentage of Target Sequences with motif6.46%
Number of Background Sequences with motif2335.1
Percentage of Background Sequences with motif5.03%
Average Position of motif in Targets304.5 +/- 154.5bp
Average Position of motif in Background279.0 +/- 145.5bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0095.1_Zfp161_1/Jaspar

Match Rank:1
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--ACGCGCGC------
TGGCGCGCGCGCCTGA

PB0008.1_E2F2_1/Jaspar

Match Rank:2
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-ACGCGCGC------
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:3
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-ACGCGCGC------
ANCGCGCGCCCTTNN

POL006.1_BREu/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ACGCGCGC-
-AGCGCGCC

PB0044.1_Mtf1_1/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---ACGCGCGC-----
GGGCCGTGTGCAAAAA

PB0076.1_Sp4_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----ACGCGCGC-----
GGTCCCGCCCCCTTCTC

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ACGCGCGC
TACGTGCV-

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:8
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACGCGCGC
RTACGTGC--

MA0131.1_HINFP/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACGCGCGC
TAACGTCCGC

MA0506.1_NRF1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--ACGCGCGC-
GCGCCTGCGCA