Information for 7-CTGACCCCGT (Motif 5)


Reverse Opposite:

p-value:1e-12
log p-value:-2.968e+01
Information Content per bp:1.699
Number of Target Sequences with motif250.0
Percentage of Target Sequences with motif6.96%
Number of Background Sequences with motif1981.9
Percentage of Background Sequences with motif4.27%
Average Position of motif in Targets291.7 +/- 155.0bp
Average Position of motif in Background274.6 +/- 157.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0057.1_Rxra_1/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----CTGACCCCGT---
TGTCGTGACCCCTTAAT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:2
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----CTGACCCCGT---
NNANTTGACCCCTNNNN

PB0153.1_Nr2f2_2/Jaspar

Match Rank:3
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCCCGT---
NNNNTGACCCGGCGCG

PB0118.1_Esrra_2/Jaspar

Match Rank:4
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----CTGACCCCGT---
NNNNTTGACCCCTNNNN

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---CTGACCCCGT---
NNCNTGACCCCGCTCT

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:6
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:CTGACCCCGT
-TGACCT---

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CTGACCCCGT----
TATCGACCCCCCACAG

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTGACCCCGT
ATCACCCCAT

MA0595.1_SREBF1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CTGACCCCGT
ATCACCCCAC

PH0164.1_Six4/Jaspar

Match Rank:10
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CTGACCCCGT---
ATAAATGACACCTATCA