Information for 9-ACGGAATTAT (Motif 7)


Reverse Opposite:

p-value:1e-11
log p-value:-2.711e+01
Information Content per bp:1.958
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.39%
Number of Background Sequences with motif12.9
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets249.9 +/- 151.1bp
Average Position of motif in Background262.6 +/- 142.7bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.72
Offset:4
Orientation:forward strand
Alignment:ACGGAATTAT
----AATTA-

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:ACGGAATTAT
-NGGGATTA-

MF0010.1_Homeobox_class/Jaspar

Match Rank:3
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:ACGGAATTAT-
----AATTATT

MA0136.1_ELF5/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:ACGGAATTAT
AAGGAAGTA-

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-ACGGAATTAT
RCCGGAAGTD-

PB0012.1_Elf3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---ACGGAATTAT
AACAAGGAAGTAA

MA0132.1_Pdx1/Jaspar

Match Rank:7
Score:0.65
Offset:4
Orientation:reverse strand
Alignment:ACGGAATTAT
----AATTAG

PB0011.1_Ehf_1/Jaspar

Match Rank:8
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----ACGGAATTAT
AGGACCCGGAAGTAA

PB0115.1_Ehf_2/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----ACGGAATTAT--
AAGATCGGAANTNNNA

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-ACGGAATTAT
RCCGGAARYN-