Information for 2-GTTAGCCA (Motif 8)


Reverse Opposite:

p-value:1e-10
log p-value:-2.500e+01
Information Content per bp:1.961
Number of Target Sequences with motif217.0
Percentage of Target Sequences with motif6.04%
Number of Background Sequences with motif1737.3
Percentage of Background Sequences with motif3.74%
Average Position of motif in Targets277.8 +/- 166.9bp
Average Position of motif in Background283.4 +/- 158.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0167.1_Tcf1/Jaspar

Match Rank:1
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------GTTAGCCA---
NTTTTAGTTAACNNAGN

PB0081.1_Tcf1_1/Jaspar

Match Rank:2
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GTTAGCCA----
ACTTAGTTAACTAAAAA

PH0168.1_Hnf1b/Jaspar

Match Rank:3
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----GTTAGCCA-----
AGCTGTTAACTAGCCGT

MA0117.1_Mafb/Jaspar

Match Rank:4
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--GTTAGCCA
NCGTCAGC--

MA0161.1_NFIC/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:GTTAGCCA-
---TGCCAA

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GTTAGCCA-
-BCAGACWA

PB0109.1_Bbx_2/Jaspar

Match Rank:7
Score:0.61
Offset:-6
Orientation:reverse strand
Alignment:------GTTAGCCA---
NNNNCTGTTAACNNTNN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTTAGCCA
--CAGCC-

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GTTAGCCA----
ACTAGCCAATCA

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GTTAGCCA----
NNAATTAGTCACGGT