Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3587)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46401)	% of Background Sequences with Motif
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-4	-1.019e+01	0.0099	113.0	3.15%	983.7	2.12%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-2	-6.587e+00	0.1820	1909.0	53.15%	23500.4	50.64%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e-2	-5.017e+00	0.5832	287.0	7.99%	3206.3	6.91%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-2	-4.678e+00	0.6139	2572.0	71.60%	32392.8	69.80%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-2	-4.667e+00	0.6139	587.0	16.34%	6923.7	14.92%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-4.244e+00	0.6313	2099.0	58.44%	26275.6	56.62%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.938e+00	0.7351	1662.0	46.27%	20672.4	44.54%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-1	-3.878e+00	0.7351	100.0	2.78%	1045.0	2.25%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e-1	-3.419e+00	0.9609	354.0	9.86%	4156.5	8.96%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e-1	-3.228e+00	1.0000	8.0	0.22%	49.0	0.11%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-3.196e+00	1.0000	351.0	9.77%	4141.2	8.92%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-3.096e+00	1.0000	183.0	5.09%	2083.8	4.49%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e-1	-3.036e+00	1.0000	1018.0	28.34%	12572.5	27.09%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e-1	-3.028e+00	1.0000	364.0	10.13%	4321.0	9.31%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-3.008e+00	1.0000	32.0	0.89%	301.4	0.65%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.992e+00	1.0000	1015.0	28.26%	12541.1	27.02%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-2.863e+00	1.0000	163.0	4.54%	1857.8	4.00%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e-1	-2.796e+00	1.0000	178.0	4.96%	2046.0	4.41%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e-1	-2.772e+00	1.0000	11.0	0.31%	83.8	0.18%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e-1	-2.668e+00	1.0000	759.0	21.13%	9339.1	20.12%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e-1	-2.436e+00	1.0000	68.0	1.89%	739.5	1.59%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.405e+00	1.0000	44.0	1.22%	458.4	0.99%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-1	-2.403e+00	1.0000	563.0	15.67%	6898.8	14.86%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e-1	-2.346e+00	1.0000	1651.0	45.96%	20822.3	44.87%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-2.246e+00	1.0000	594.0	16.54%	7315.8	15.76%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-2.239e+00	1.0000	206.0	5.73%	2439.2	5.26%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-2.226e+00	1.0000	159.0	4.43%	1859.1	4.01%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.130e+00	1.0000	882.0	24.55%	11000.9	23.70%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.045e+00	1.0000	708.0	19.71%	8798.5	18.96%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.988e+00	1.0000	673.0	18.74%	8363.2	18.02%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.845e+00	1.0000	301.0	8.38%	3673.7	7.92%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.819e+00	1.0000	501.0	13.95%	6207.2	13.37%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.809e+00	1.0000	136.0	3.79%	1612.0	3.47%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-1.792e+00	1.0000	199.0	5.54%	2399.1	5.17%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.765e+00	1.0000	1079.0	30.04%	13600.6	29.31%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.743e+00	1.0000	75.0	2.09%	865.1	1.86%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.717e+00	1.0000	2424.0	67.48%	30978.3	66.75%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.676e+00	1.0000	256.0	7.13%	3129.5	6.74%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.643e+00	1.0000	517.0	14.39%	6442.9	13.88%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.567e+00	1.0000	240.0	6.68%	2942.3	6.34%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.549e+00	1.0000	926.0	25.78%	11690.7	25.19%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-1.544e+00	1.0000	922.0	25.67%	11640.1	25.08%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-1.530e+00	1.0000	265.0	7.38%	3263.7	7.03%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.519e+00	1.0000	38.0	1.06%	428.9	0.92%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.500e+00	1.0000	739.0	20.57%	9306.8	20.05%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.468e+00	1.0000	100.0	2.78%	1196.5	2.58%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.457e+00	1.0000	46.0	1.28%	529.6	1.14%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.449e+00	1.0000	70.0	1.95%	825.4	1.78%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.395e+00	1.0000	1068.0	29.73%	13553.4	29.20%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.345e+00	1.0000	265.0	7.38%	3291.4	7.09%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-1.330e+00	1.0000	165.0	4.59%	2027.4	4.37%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.307e+00	1.0000	522.0	14.53%	6574.1	14.17%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.173e+00	1.0000	271.0	7.54%	3396.6	7.32%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.164e+00	1.0000	580.0	16.15%	7350.1	15.84%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.098e+00	1.0000	857.0	23.86%	10926.9	23.54%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.083e+00	1.0000	84.0	2.34%	1033.9	2.23%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.066e+00	1.0000	1639.0	45.63%	21016.2	45.28%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.065e+00	1.0000	60.0	1.67%	732.9	1.58%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.054e+00	1.0000	230.0	6.40%	2894.6	6.24%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.040e+00	1.0000	121.0	3.37%	1507.9	3.25%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.040e+00	1.0000	241.0	6.71%	3037.1	6.54%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-1.038e+00	1.0000	122.0	3.40%	1520.7	3.28%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.024e+00	1.0000	1076.0	29.96%	13769.2	29.67%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.024e+00	1.0000	118.0	3.29%	1471.9	3.17%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.001e+00	1.0000	756.0	21.05%	9656.8	20.81%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-1.001e+00	1.0000	513.0	14.28%	6533.0	14.08%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-9.940e-01	1.0000	773.0	21.52%	9877.6	21.28%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-9.456e-01	1.0000	892.0	24.83%	11425.8	24.62%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-9.447e-01	1.0000	290.0	8.07%	3683.2	7.94%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-8.997e-01	1.0000	59.0	1.64%	735.3	1.58%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.860e-01	1.0000	214.0	5.96%	2720.7	5.86%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-8.580e-01	1.0000	256.0	7.13%	3265.3	7.04%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-8.433e-01	1.0000	667.0	18.57%	8560.1	18.44%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-8.341e-01	1.0000	243.0	6.77%	3103.1	6.69%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-8.271e-01	1.0000	1366.0	38.03%	17584.6	37.89%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-8.173e-01	1.0000	2020.0	56.24%	26036.3	56.10%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-8.149e-01	1.0000	866.0	24.11%	11136.1	23.99%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-7.989e-01	1.0000	165.0	4.59%	2108.0	4.54%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.911e-01	1.0000	270.0	7.52%	3460.1	7.46%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.605e-01	1.0000	454.0	12.64%	5840.8	12.59%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-7.575e-01	1.0000	90.0	2.51%	1149.2	2.48%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-7.489e-01	1.0000	1566.0	43.60%	20201.7	43.53%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-7.443e-01	1.0000	1471.0	40.95%	18976.6	40.89%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-7.190e-01	1.0000	750.0	20.88%	9675.5	20.85%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-7.072e-01	1.0000	448.0	12.47%	5779.5	12.45%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-6.765e-01	1.0000	499.0	13.89%	6448.0	13.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.761e-01	1.0000	3.0	0.08%	36.0	0.08%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.486e-01	1.0000	295.0	8.21%	3819.9	8.23%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.336e-01	1.0000	1524.0	42.43%	19714.4	42.48%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-6.215e-01	1.0000	289.0	8.05%	3749.4	8.08%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.136e-01	1.0000	226.0	6.29%	2936.0	6.33%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.083e-01	1.0000	639.0	17.79%	8284.2	17.85%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-6.040e-01	1.0000	584.0	16.26%	7574.1	16.32%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.004e-01	1.0000	626.0	17.43%	8119.1	17.49%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-5.925e-01	1.0000	164.0	4.57%	2136.5	4.60%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-5.840e-01	1.0000	344.0	9.58%	4473.2	9.64%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.810e-01	1.0000	68.0	1.89%	890.6	1.92%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-5.810e-01	1.0000	68.0	1.89%	890.6	1.92%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-5.704e-01	1.0000	248.0	6.90%	3232.3	6.96%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.527e-01	1.0000	2347.0	65.34%	30387.7	65.48%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-5.503e-01	1.0000	1146.0	31.90%	14871.1	32.04%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-5.488e-01	1.0000	29.0	0.81%	384.8	0.83%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-5.467e-01	1.0000	52.0	1.45%	686.8	1.48%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.278e-01	1.0000	55.0	1.53%	728.7	1.57%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-5.187e-01	1.0000	125.0	3.48%	1645.6	3.55%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-5.160e-01	1.0000	712.0	19.82%	9271.0	19.98%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.101e-01	1.0000	203.0	5.65%	2664.3	5.74%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.063e-01	1.0000	889.0	24.75%	11569.0	24.93%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.010e-01	1.0000	523.0	14.56%	6826.3	14.71%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-4.864e-01	1.0000	1120.0	31.18%	14570.2	31.39%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-4.790e-01	1.0000	1197.0	33.32%	15571.2	33.55%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.744e-01	1.0000	570.0	15.87%	7448.7	16.05%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-4.734e-01	1.0000	309.0	8.60%	4056.2	8.74%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-4.639e-01	1.0000	61.0	1.70%	817.0	1.76%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-4.561e-01	1.0000	151.0	4.20%	2000.1	4.31%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-4.455e-01	1.0000	202.0	5.62%	2670.4	5.75%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-4.412e-01	1.0000	264.0	7.35%	3481.2	7.50%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-4.298e-01	1.0000	303.0	8.44%	3994.8	8.61%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-4.190e-01	1.0000	1263.0	35.16%	16463.4	35.47%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-4.157e-01	1.0000	142.0	3.95%	1893.0	4.08%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-4.076e-01	1.0000	13.0	0.36%	185.0	0.40%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-4.020e-01	1.0000	158.0	4.40%	2107.4	4.54%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.905e-01	1.0000	117.0	3.26%	1571.4	3.39%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.866e-01	1.0000	51.0	1.42%	698.3	1.50%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-3.830e-01	1.0000	1827.0	50.86%	23782.9	51.24%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-3.789e-01	1.0000	736.0	20.49%	9655.7	20.80%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-3.722e-01	1.0000	327.0	9.10%	4331.4	9.33%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-3.691e-01	1.0000	367.0	10.22%	4855.9	10.46%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-3.654e-01	1.0000	66.0	1.84%	902.4	1.94%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.589e-01	1.0000	820.0	22.83%	10759.0	23.18%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.516e-01	1.0000	774.0	21.55%	10166.8	21.91%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.509e-01	1.0000	202.0	5.62%	2702.8	5.82%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.494e-01	1.0000	51.0	1.42%	705.4	1.52%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.478e-01	1.0000	936.0	26.06%	12273.1	26.44%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-3.464e-01	1.0000	234.0	6.51%	3124.1	6.73%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.184e-01	1.0000	33.0	0.92%	468.6	1.01%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-3.148e-01	1.0000	1829.0	50.92%	23862.4	51.42%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-3.130e-01	1.0000	9.0	0.25%	137.3	0.30%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-3.073e-01	1.0000	18.0	0.50%	264.3	0.57%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.070e-01	1.0000	33.0	0.92%	470.4	1.01%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-3.014e-01	1.0000	2463.0	68.57%	32046.0	69.05%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.990e-01	1.0000	700.0	19.49%	9239.5	19.91%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-2.955e-01	1.0000	895.0	24.92%	11779.1	25.38%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.934e-01	1.0000	1119.0	31.15%	14690.8	31.65%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.928e-01	1.0000	64.0	1.78%	892.0	1.92%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-2.881e-01	1.0000	1627.0	45.30%	21275.0	45.84%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.878e-01	1.0000	186.0	5.18%	2516.5	5.42%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.721e-01	1.0000	94.0	2.62%	1300.3	2.80%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-2.648e-01	1.0000	283.0	7.88%	3806.2	8.20%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.610e-01	1.0000	475.0	13.22%	6329.0	13.64%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.454e-01	1.0000	582.0	16.20%	7739.3	16.68%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.422e-01	1.0000	54.0	1.50%	770.7	1.66%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-2.364e-01	1.0000	953.0	26.53%	12584.7	27.12%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.281e-01	1.0000	10.0	0.28%	161.7	0.35%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.256e-01	1.0000	2143.0	59.66%	27998.1	60.33%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-2.189e-01	1.0000	212.0	5.90%	2893.7	6.24%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.177e-01	1.0000	3196.0	88.98%	41491.8	89.40%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.156e-01	1.0000	99.0	2.76%	1387.2	2.99%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-2.099e-01	1.0000	616.0	17.15%	8214.0	17.70%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.988e-01	1.0000	389.0	10.83%	5244.5	11.30%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.862e-01	1.0000	648.0	18.04%	8654.6	18.65%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-1.850e-01	1.0000	26.0	0.72%	398.2	0.86%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.847e-01	1.0000	372.0	10.36%	5031.5	10.84%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-1.800e-01	1.0000	135.0	3.76%	1887.5	4.07%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-1.792e-01	1.0000	1280.0	35.63%	16896.3	36.41%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.754e-01	1.0000	24.0	0.67%	372.6	0.80%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.746e-01	1.0000	6.0	0.17%	108.5	0.23%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.730e-01	1.0000	2505.0	69.74%	32712.8	70.49%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.612e-01	1.0000	666.0	18.54%	8916.3	19.21%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.492e-01	1.0000	34.0	0.95%	521.8	1.12%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.482e-01	1.0000	285.0	7.93%	3910.5	8.43%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.452e-01	1.0000	360.0	10.02%	4907.1	10.57%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.442e-01	1.0000	1904.0	53.01%	25021.1	53.91%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.358e-01	1.0000	431.0	12.00%	5855.6	12.62%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.351e-01	1.0000	564.0	15.70%	7608.5	16.39%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.342e-01	1.0000	1489.0	41.45%	19671.0	42.39%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.297e-01	1.0000	528.0	14.70%	7141.2	15.39%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.228e-01	1.0000	1124.0	31.29%	14949.2	32.21%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.154e-01	1.0000	135.0	3.76%	1927.4	4.15%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.135e-01	1.0000	1135.0	31.60%	15108.2	32.55%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.058e-01	1.0000	490.0	13.64%	6671.2	14.37%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-9.833e-02	1.0000	1338.0	37.25%	17777.3	38.30%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-9.430e-02	1.0000	35.0	0.97%	557.8	1.20%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-9.373e-02	1.0000	45.0	1.25%	700.2	1.51%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-8.909e-02	1.0000	110.0	3.06%	1607.4	3.46%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-8.895e-02	1.0000	703.0	19.57%	9504.0	20.48%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-8.548e-02	1.0000	25.0	0.70%	416.8	0.90%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-8.314e-02	1.0000	486.0	13.53%	6653.9	14.34%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-7.960e-02	1.0000	157.0	4.37%	2258.4	4.87%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.850e-02	1.0000	4.0	0.11%	92.9	0.20%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-7.797e-02	1.0000	787.0	21.91%	10629.1	22.90%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-7.592e-02	1.0000	1456.0	40.53%	19360.4	41.72%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.569e-02	1.0000	1093.0	30.43%	14638.2	31.54%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-7.509e-02	1.0000	1084.0	30.18%	14522.2	31.29%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.075e-02	1.0000	4.0	0.11%	94.9	0.20%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-6.919e-02	1.0000	488.0	13.59%	6705.6	14.45%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.728e-02	1.0000	778.0	21.66%	10535.4	22.70%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.620e-02	1.0000	324.0	9.02%	4527.9	9.76%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-6.428e-02	1.0000	124.0	3.45%	1824.4	3.93%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.253e-02	1.0000	65.0	1.81%	1005.8	2.17%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-5.827e-02	1.0000	606.0	16.87%	8291.3	17.87%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.823e-02	1.0000	92.0	2.56%	1388.5	2.99%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.792e-02	1.0000	58.0	1.61%	910.1	1.96%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-5.595e-02	1.0000	563.0	15.67%	7728.2	16.65%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-5.211e-02	1.0000	215.0	5.99%	3084.7	6.65%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.990e-02	1.0000	1202.0	33.46%	16134.1	34.76%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-4.314e-02	1.0000	504.0	14.03%	6981.0	15.04%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-4.182e-02	1.0000	669.0	18.62%	9171.6	19.76%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-3.912e-02	1.0000	658.0	18.32%	9035.4	19.47%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.628e-02	1.0000	360.0	10.02%	5077.8	10.94%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-3.581e-02	1.0000	2926.0	81.46%	38333.2	82.60%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-3.580e-02	1.0000	1075.0	29.93%	14531.5	31.31%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-3.377e-02	1.0000	923.0	25.70%	12549.0	27.04%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.371e-02	1.0000	627.0	17.46%	8645.5	18.63%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.299e-02	1.0000	148.0	4.12%	2205.8	4.75%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-3.277e-02	1.0000	640.0	17.82%	8821.5	19.01%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-3.245e-02	1.0000	169.0	4.70%	2496.4	5.38%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.196e-02	1.0000	59.0	1.64%	955.4	2.06%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.102e-02	1.0000	47.0	1.31%	782.7	1.69%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-3.046e-02	1.0000	164.0	4.57%	2432.6	5.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.838e-02	1.0000	310.0	8.63%	4429.4	9.54%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.714e-02	1.0000	373.0	10.38%	5283.5	11.38%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-2.693e-02	1.0000	751.0	20.91%	10316.8	22.23%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.388e-02	1.0000	1131.0	31.49%	15328.0	33.03%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.367e-02	1.0000	850.0	23.66%	11640.7	25.08%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-2.311e-02	1.0000	2418.0	67.32%	31954.5	68.85%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.262e-02	1.0000	350.0	9.74%	4992.4	10.76%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.177e-02	1.0000	219.0	6.10%	3215.4	6.93%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-2.077e-02	1.0000	1211.0	33.71%	16394.9	35.33%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.054e-02	1.0000	167.0	4.65%	2503.4	5.39%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.970e-02	1.0000	255.0	7.10%	3717.0	8.01%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.863e-02	1.0000	1646.0	45.82%	22067.8	47.55%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.669e-02	1.0000	960.0	26.73%	13137.1	28.31%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.654e-02	1.0000	50.0	1.39%	854.5	1.84%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.596e-02	1.0000	310.0	8.63%	4484.8	9.66%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-1.383e-02	1.0000	495.0	13.78%	6994.5	15.07%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.346e-02	1.0000	1236.0	34.41%	16785.8	36.17%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.095e-02	1.0000	245.0	6.82%	3628.0	7.82%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.055e-02	1.0000	216.0	6.01%	3231.6	6.96%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.034e-02	1.0000	516.0	14.37%	7307.6	15.75%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.912e-03	1.0000	609.0	16.95%	8556.9	18.44%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-8.295e-03	1.0000	208.0	5.79%	3138.9	6.76%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-7.978e-03	1.0000	1293.0	36.00%	17603.4	37.93%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-7.256e-03	1.0000	1796.0	50.00%	24145.3	52.03%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-5.963e-03	1.0000	653.0	18.18%	9201.0	19.83%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.959e-03	1.0000	496.0	13.81%	7113.9	15.33%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-4.913e-03	1.0000	809.0	22.52%	11298.3	24.34%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-4.791e-03	1.0000	75.0	2.09%	1279.5	2.76%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.256e-03	1.0000	200.0	5.57%	3073.4	6.62%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-4.073e-03	1.0000	347.0	9.66%	5108.5	11.01%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-4.070e-03	1.0000	131.0	3.65%	2100.6	4.53%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-3.644e-03	1.0000	448.0	12.47%	6493.4	13.99%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-3.574e-03	1.0000	162.0	4.51%	2549.7	5.49%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-3.279e-03	1.0000	400.0	11.14%	5850.9	12.61%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-3.218e-03	1.0000	1119.0	31.15%	15441.5	33.27%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.404e-03	1.0000	280.0	7.80%	4227.3	9.11%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-2.395e-03	1.0000	25.0	0.70%	534.8	1.15%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.777e-03	1.0000	459.0	12.78%	6706.3	14.45%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.520e-03	1.0000	173.0	4.82%	2756.1	5.94%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.240e-04	1.0000	225.0	6.26%	3530.8	7.61%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-8.200e-04	1.0000	907.0	25.25%	12793.9	27.57%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-7.580e-04	1.0000	29.0	0.81%	633.8	1.37%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.640e-04	1.0000	102.0	2.84%	1828.8	3.94%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.470e-04	1.0000	631.0	17.57%	9250.9	19.93%