Information for 1-CGAATGGAATSR (Motif 1)


Reverse Opposite:

p-value:1e-30
log p-value:-7.115e+01
Information Content per bp:1.572
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.57%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets228.5 +/- 170.3bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.89
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0468.1_DUX4/Jaspar

Match Rank:1
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGAATGGAATSR
-TAATTTAATCA

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:2
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CGAATGGAATSR
--AATGGAAAAT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CGAATGGAATSR-
-AGATGCAATCCC

PB0068.1_Sox1_1/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CGAATGGAATSR--
AATCAATTCAATAATT

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:5
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CGAATGGAATSR
--NCTGGAATGC

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.63
Offset:-4
Orientation:forward strand
Alignment:----CGAATGGAATSR
ACTATGAATGAATGAT

PB0169.1_Sox15_2/Jaspar

Match Rank:7
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGAATGGAATSR--
TTGAATGAAATTCGA

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:forward strand
Alignment:CGAATGGAATSR
YTAATYNRATTA

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:CGAATGGAATSR
-TAATTGATTA-

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGAATGGAATSR
CTAATKGV----