Information for 2-CTSCAAGT (Motif 10)


Reverse Opposite:

p-value:1e-9
log p-value:-2.219e+01
Information Content per bp:1.868
Number of Target Sequences with motif311.0
Percentage of Target Sequences with motif11.73%
Number of Background Sequences with motif3862.2
Percentage of Background Sequences with motif8.20%
Average Position of motif in Targets291.1 +/- 154.8bp
Average Position of motif in Background277.8 +/- 159.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTSCAAGT--
--GCACGTAY

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:2
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CTSCAAGT--
--GCACGTNC

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CTSCAAGT----
--GCACGTACCC

MA0004.1_Arnt/Jaspar

Match Rank:4
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:CTSCAAGT-
---CACGTG

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:5
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:CTSCAAGT-
-BGCACGTA

MA0464.1_Bhlhe40/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:CTSCAAGT---
NTGCACGTGAG

c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CTSCAAGT----
--CCACGTGGNN

NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CTSCAAGT---
-KCCACGTGAC

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:CTSCAAGT----
--CCACGTGGNN

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:10
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:CTSCAAGT---
---CACGTGNC