Information for 6-GGCGCCTG (Motif 12)


Reverse Opposite:

p-value:1e-6
log p-value:-1.535e+01
Information Content per bp:1.938
Number of Target Sequences with motif93.0
Percentage of Target Sequences with motif3.51%
Number of Background Sequences with motif933.7
Percentage of Background Sequences with motif1.98%
Average Position of motif in Targets264.9 +/- 155.0bp
Average Position of motif in Background274.7 +/- 152.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0113.1_E2F3_2/Jaspar

Match Rank:1
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCTG----
AGCTCGGCGCCAAAAGC

POL006.1_BREu/Jaspar

Match Rank:2
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:GGCGCCTG
GGCGCGCT

PB0112.1_E2F2_2/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCTG----
CCTTCGGCGCCAAAAGG

PB0052.1_Plagl1_1/Jaspar

Match Rank:4
Score:0.68
Offset:-5
Orientation:reverse strand
Alignment:-----GGCGCCTG---
NNNGGGGCGCCCCCNN

MA0506.1_NRF1/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:forward strand
Alignment:GGCGCCTG----
-GCGCCTGCGCA

PB0009.1_E2F3_1/Jaspar

Match Rank:6
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCTG--
ATAAGGGCGCGCGAT

PB0008.1_E2F2_1/Jaspar

Match Rank:7
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGCGCCTG--
ATAAAGGCGCGCGAT

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GGCGCCTG--
NNCACCTGNN

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GGCGCCTG-----
-GCGCATGCGCAG

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:10
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGCGCCTG-----
NNTNCGCACCTGTNGAN