Information for 17-GAGAGAGAGA (Motif 13)


Reverse Opposite:

p-value:1e-6
log p-value:-1.498e+01
Information Content per bp:1.925
Number of Target Sequences with motif112.0
Percentage of Target Sequences with motif4.22%
Number of Background Sequences with motif1199.5
Percentage of Background Sequences with motif2.55%
Average Position of motif in Targets245.5 +/- 153.0bp
Average Position of motif in Background274.8 +/- 166.7bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.26
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0140.1_Irf6_2/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGA---
NNNACCGAGAGTNNN

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGA--
GAAAGTGAAAGT

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GAGAGAGAGA---
TTGACCGAGAATTCC

MA0508.1_PRDM1/Jaspar

Match Rank:4
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGA----
AGAAAGTGAAAGTGA

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:5
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GAGAGAGAGA--
GAAAGTGAAAGT

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGA--
GAAACTGAAACT

MA0051.1_IRF2/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGAGAGAGA-------
GGAAAGCGAAACCAAAAC

MA0513.1_SMAD2::SMAD3::SMAD4/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGAGAGAGA-
AGGTGNCAGACAG

PB0138.1_Irf4_2/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GAGAGAGAGA-----
GNNACCGAGAATNNN

MA0050.2_IRF1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGAGAGAGA------
AAANNGAAAGTGAAAGTAAAN