Information for 20-AGCCTGGAAC (Motif 17)


Reverse Opposite:

p-value:1e-4
log p-value:-1.082e+01
Information Content per bp:1.947
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif80.3
Percentage of Background Sequences with motif0.17%
Average Position of motif in Targets312.7 +/- 149.6bp
Average Position of motif in Background254.7 +/- 151.9bp
Strand Bias (log2 ratio + to - strand density)2.9
Multiplicity (# of sites on avg that occur together)2.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGCCTGGAAC--
--CCAGGAACAG

MA0524.1_TFAP2C/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AGCCTGGAAC----
TGCCCTGGGGCNANN

TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer

Match Rank:3
Score:0.58
Offset:2
Orientation:forward strand
Alignment:AGCCTGGAAC--
--CCWGGAATGY

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AGCCTGGAAC
GGTCTGGCAT

PB0090.1_Zbtb12_1/Jaspar

Match Rank:5
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--AGCCTGGAAC-----
NNGATCTAGAACCTNNN

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGCCTGGAAC
TWGTCTGV---

MA0152.1_NFATC2/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGCCTGGAAC-
----TGGAAAA

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCCTGGAAC
CAGCC------

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGCCTGGAAC
CTTCCNGGAA-

MA0505.1_Nr5a2/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---AGCCTGGAAC--
GCTGACCTTGAACTN