Information for 20-CGGTCTTA (Motif 20)


Reverse Opposite:

p-value:1e-2
log p-value:-6.317e+00
Information Content per bp:1.959
Number of Target Sequences with motif18.0
Percentage of Target Sequences with motif0.68%
Number of Background Sequences with motif144.2
Percentage of Background Sequences with motif0.31%
Average Position of motif in Targets269.9 +/- 159.8bp
Average Position of motif in Background285.8 +/- 147.2bp
Strand Bias (log2 ratio + to - strand density)2.4
Multiplicity (# of sites on avg that occur together)1.78
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGGTCTTA
NGGGATTA

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CGGTCTTA-----
AAGACGCTGTAAAGCGA

PH0164.1_Six4/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CGGTCTTA-----
TNNNNGGTGTCATNTNT

PH0158.1_Rhox11_2/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----CGGTCTTA-----
AGGACGCTGTAAAGGGA

PB0187.1_Tcf7_2/Jaspar

Match Rank:5
Score:0.58
Offset:0
Orientation:forward strand
Alignment:CGGTCTTA-------
CCGTATTATAAACAA

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:CGGTCTTA--
AGGTGTTAAT

MA0131.1_HINFP/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-CGGTCTTA-
GCGGACGTTN

PH0067.1_Hoxc12/Jaspar

Match Rank:8
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CGGTCTTA-------
TTAGGTCGTAAAATTTC

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:9
Score:0.55
Offset:-7
Orientation:reverse strand
Alignment:-------CGGTCTTA--
NNANTGGTGGTCTTNNN

MA0037.2_GATA3/Jaspar

Match Rank:10
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:CGGTCTTA---
---TCTTATCT