Information for 21-TGGCTGGCTTGG (Motif 21)


Reverse Opposite:

p-value:1e-2
log p-value:-5.136e+00
Information Content per bp:1.530
Number of Target Sequences with motif2.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets252.8 +/- 172.0bp
Average Position of motif in Background269.2 +/- 229.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)10.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----TGGCTGGCTTGG
NNTNNTGTCTGGNNTNG

PB0029.1_Hic1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TGGCTGGCTTGG-
NGTAGGTTGGCATNNN

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:3
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TGGCTGGCTTGG
GGTCTGGCAT--

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGCTTGG
TWGTCTGV-----

MA0073.1_RREB1/Jaspar

Match Rank:5
Score:0.58
Offset:-6
Orientation:reverse strand
Alignment:------TGGCTGGCTTGG--
NGGGGGGGGGTGGTTTGGGG

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:TGGCTGGCTTGG
-GGCGCGCT---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGCTGGCTTGG
CTGTCTGG-----

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:TGGCTGGCTTGG
-NGCTN------

POL004.1_CCAAT-box/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:TGGCTGGCTTGG
TGATTGGCTANN

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----TGGCTGGCTTGG-
AAATTTGCTGACTTAGA