Information for 25-AGGCTGTC (Motif 26)


Reverse Opposite:

p-value:1e0
log p-value:-5.632e-01
Information Content per bp:1.530
Number of Target Sequences with motif39.0
Percentage of Target Sequences with motif1.47%
Number of Background Sequences with motif706.8
Percentage of Background Sequences with motif1.50%
Average Position of motif in Targets273.4 +/- 158.2bp
Average Position of motif in Background275.0 +/- 161.0bp
Strand Bias (log2 ratio + to - strand density)-1.7
Multiplicity (# of sites on avg that occur together)2.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.71
Offset:2
Orientation:forward strand
Alignment:AGGCTGTC
--GCTGTG

MA0498.1_Meis1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGGCTGTC--------
-AGCTGTCACTCACCT

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGGCTGTC---
-VGCTGWCAVB

PH0169.1_Tgif1/Jaspar

Match Rank:4
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGGCTGTC------
NNNCAGCTGTCAATATN

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGGCTGTC
-NGCTN--

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGGCTGTC-----
-GSCTGTCACTCA

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:7
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AGGCTGTC
TWGTCTGV-

PH0141.1_Pknox2/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AGGCTGTC-----
AAGCACCTGTCAATAT

PB0151.1_Myf6_2/Jaspar

Match Rank:9
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----AGGCTGTC---
GGNGCGNCTGTTNNN

MA0117.1_Mafb/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGGCTGTC--
--GCTGACGC