Information for 7-AGAGTGTTTCAA (Motif 5)


Reverse Opposite:

p-value:1e-17
log p-value:-4.094e+01
Information Content per bp:1.894
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif1.02%
Number of Background Sequences with motif47.7
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets274.3 +/- 165.7bp
Average Position of motif in Background251.1 +/- 168.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.74
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGAGTGTTTCAA
--NATGTTGCAA

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:2
Score:0.63
Offset:3
Orientation:forward strand
Alignment:AGAGTGTTTCAA-
---CGGTTTCAAA

IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:AGAGTGTTTCAA-
---TGGTTTCAGT

PH0163.1_Six3/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTTTCAA----
GATAGGGTATCACTAAT

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTTTCAA----
AATAGGGTATCAATATT

PH0165.1_Six6_1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTTTCAA----
AATAGGGTATCAATTAT

MA0099.2_JUN::FOS/Jaspar

Match Rank:7
Score:0.57
Offset:4
Orientation:reverse strand
Alignment:AGAGTGTTTCAA
----TGAGTCA-

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGAGTGTTTCAA
--ATTGTTA---

MA0157.1_FOXO3/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:AGAGTGTTTCAA
----TGTTTACA

PB0059.1_Six6_1/Jaspar

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-AGAGTGTTTCAA----
AATAGGGTATCATATAT