Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 2655)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 47123)	% of Background Sequences with Motif
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-2	-6.475e+00	0.4071	77.0	2.90%	956.6	2.03%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-2	-5.042e+00	0.8529	34.0	1.28%	378.6	0.80%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-1	-4.374e+00	1.0000	263.0	9.92%	4077.2	8.66%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e-1	-4.000e+00	1.0000	192.0	7.24%	2931.0	6.23%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e-1	-3.447e+00	1.0000	49.0	1.85%	656.6	1.39%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e-1	-3.354e+00	1.0000	560.0	21.12%	9274.3	19.70%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.216e+00	1.0000	63.0	2.38%	887.7	1.89%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-3.216e+00	1.0000	63.0	2.38%	887.7	1.89%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e-1	-3.208e+00	1.0000	234.0	8.83%	3712.8	7.89%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e-1	-2.807e+00	1.0000	32.0	1.21%	422.0	0.90%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e-1	-2.783e+00	1.0000	135.0	5.09%	2095.9	4.45%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-2.617e+00	1.0000	1088.0	41.04%	18664.3	39.64%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e-1	-2.455e+00	1.0000	46.0	1.74%	659.5	1.40%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e-1	-2.351e+00	1.0000	53.0	2.00%	778.6	1.65%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.308e+00	1.0000	692.0	26.10%	11772.1	25.00%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-2.179e+00	1.0000	226.0	8.53%	3706.3	7.87%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.090e+00	1.0000	196.0	7.39%	3205.0	6.81%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-2.085e+00	1.0000	547.0	20.63%	9286.8	19.72%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.987e+00	1.0000	403.0	15.20%	6797.0	14.44%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.980e+00	1.0000	525.0	19.80%	8925.0	18.96%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-1.973e+00	1.0000	744.0	28.06%	12764.5	27.11%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.958e+00	1.0000	519.0	19.58%	8825.9	18.74%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.913e+00	1.0000	281.0	10.60%	4695.4	9.97%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.907e+00	1.0000	137.0	5.17%	2222.5	4.72%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.892e+00	1.0000	10.0	0.38%	121.6	0.26%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.766e+00	1.0000	252.0	9.51%	4219.3	8.96%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-1.765e+00	1.0000	125.0	4.72%	2035.5	4.32%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.760e+00	1.0000	8.0	0.30%	95.3	0.20%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.740e+00	1.0000	379.0	14.30%	6430.6	13.66%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.733e+00	1.0000	532.0	20.07%	9105.2	19.34%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.704e+00	1.0000	726.0	27.39%	12519.1	26.59%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-1.674e+00	1.0000	93.0	3.51%	1501.1	3.19%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-1.623e+00	1.0000	542.0	20.45%	9308.4	19.77%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.616e+00	1.0000	18.0	0.68%	255.4	0.54%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-1.607e+00	1.0000	201.0	7.58%	3364.1	7.14%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-1.589e+00	1.0000	217.0	8.19%	3644.9	7.74%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.555e+00	1.0000	775.0	29.23%	13425.9	28.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.554e+00	1.0000	140.0	5.28%	2320.1	4.93%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.553e+00	1.0000	173.0	6.53%	2890.0	6.14%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.520e+00	1.0000	317.0	11.96%	5397.0	11.46%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.504e+00	1.0000	193.0	7.28%	3243.4	6.89%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.500e+00	1.0000	1046.0	39.46%	18230.0	38.72%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.499e+00	1.0000	50.0	1.89%	791.7	1.68%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.481e+00	1.0000	157.0	5.92%	2624.2	5.57%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.400e+00	1.0000	299.0	11.28%	5108.6	10.85%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.384e+00	1.0000	361.0	13.62%	6196.1	13.16%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.377e+00	1.0000	21.0	0.79%	316.4	0.67%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-1.320e+00	1.0000	1233.0	46.51%	21607.8	45.89%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.296e+00	1.0000	816.0	30.78%	14232.9	30.23%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-1.272e+00	1.0000	161.0	6.07%	2728.4	5.79%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.261e+00	1.0000	1335.0	50.36%	23440.7	49.78%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.208e+00	1.0000	185.0	6.98%	3158.9	6.71%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.202e+00	1.0000	33.0	1.24%	529.0	1.12%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-1.194e+00	1.0000	495.0	18.67%	8602.8	18.27%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.188e+00	1.0000	61.0	2.30%	1009.1	2.14%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.188e+00	1.0000	5.0	0.19%	65.9	0.14%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-1.160e+00	1.0000	280.0	10.56%	4831.1	10.26%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.100e+00	1.0000	103.0	3.89%	1748.0	3.71%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.094e+00	1.0000	518.0	19.54%	9039.1	19.20%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.088e+00	1.0000	412.0	15.54%	7172.3	15.23%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.050e+00	1.0000	42.0	1.58%	697.3	1.48%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.020e+00	1.0000	45.0	1.70%	752.7	1.60%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.012e+00	1.0000	119.0	4.49%	2042.6	4.34%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.008e+00	1.0000	105.0	3.96%	1798.3	3.82%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-9.981e-01	1.0000	73.0	2.75%	1241.8	2.64%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-9.946e-01	1.0000	656.0	24.75%	11513.3	24.45%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-9.413e-01	1.0000	346.0	13.05%	6053.4	12.86%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-8.812e-01	1.0000	59.0	2.23%	1013.9	2.15%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-8.684e-01	1.0000	203.0	7.66%	3550.6	7.54%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-8.661e-01	1.0000	199.0	7.51%	3480.0	7.39%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-8.527e-01	1.0000	647.0	24.41%	11411.1	24.24%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-8.505e-01	1.0000	116.0	4.38%	2020.6	4.29%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-8.428e-01	1.0000	728.0	27.46%	12851.9	27.30%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-8.388e-01	1.0000	117.0	4.41%	2040.0	4.33%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-8.385e-01	1.0000	430.0	16.22%	7573.0	16.08%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-8.354e-01	1.0000	205.0	7.73%	3594.3	7.63%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-8.132e-01	1.0000	435.0	16.41%	7671.3	16.29%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-8.015e-01	1.0000	131.0	4.94%	2295.0	4.87%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.989e-01	1.0000	234.0	8.83%	4117.6	8.75%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-7.948e-01	1.0000	831.0	31.35%	14700.7	31.22%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-7.863e-01	1.0000	223.0	8.41%	3926.3	8.34%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-7.769e-01	1.0000	976.0	36.82%	17282.6	36.71%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-7.719e-01	1.0000	71.0	2.68%	1241.5	2.64%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.597e-01	1.0000	540.0	20.37%	9554.8	20.29%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-7.536e-01	1.0000	81.0	3.06%	1422.0	3.02%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-7.202e-01	1.0000	176.0	6.64%	3112.2	6.61%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-6.991e-01	1.0000	503.0	18.97%	8925.0	18.96%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-6.869e-01	1.0000	80.0	3.02%	1417.0	3.01%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-6.856e-01	1.0000	141.0	5.32%	2500.5	5.31%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-6.842e-01	1.0000	443.0	16.71%	7865.2	16.70%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-6.509e-01	1.0000	884.0	33.35%	15716.9	33.38%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.479e-01	1.0000	1382.0	52.13%	24563.2	52.17%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-6.473e-01	1.0000	1159.0	43.72%	20603.8	43.76%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-6.407e-01	1.0000	125.0	4.72%	2227.6	4.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.396e-01	1.0000	860.0	32.44%	15296.6	32.49%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-6.057e-01	1.0000	263.0	9.92%	4696.8	9.98%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.050e-01	1.0000	523.0	19.73%	9324.2	19.80%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-5.971e-01	1.0000	1404.0	52.96%	24985.4	53.07%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-5.950e-01	1.0000	1397.0	52.70%	24862.0	52.80%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-5.937e-01	1.0000	357.0	13.47%	6375.3	13.54%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-5.808e-01	1.0000	109.0	4.11%	1958.0	4.16%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-5.757e-01	1.0000	389.0	14.67%	6953.2	14.77%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-5.455e-01	1.0000	507.0	19.12%	9070.3	19.26%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-5.453e-01	1.0000	1131.0	42.66%	20170.2	42.84%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-5.142e-01	1.0000	144.0	5.43%	2603.8	5.53%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-5.107e-01	1.0000	1817.0	68.54%	32369.6	68.75%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-5.032e-01	1.0000	384.0	14.49%	6899.3	14.65%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-4.946e-01	1.0000	246.0	9.28%	4437.9	9.43%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.722e-01	1.0000	171.0	6.45%	3102.2	6.59%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-4.658e-01	1.0000	1097.0	41.38%	19622.7	41.68%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.610e-01	1.0000	654.0	24.67%	11740.2	24.93%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-4.518e-01	1.0000	281.0	10.60%	5083.2	10.80%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.425e-01	1.0000	61.0	2.30%	1128.4	2.40%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-4.385e-01	1.0000	506.0	19.09%	9114.5	19.36%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.114e-01	1.0000	266.0	10.03%	4834.6	10.27%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-4.029e-01	1.0000	801.0	30.22%	14402.8	30.59%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.840e-01	1.0000	428.0	16.14%	7754.4	16.47%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.826e-01	1.0000	167.0	6.30%	3066.8	6.51%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-3.742e-01	1.0000	172.0	6.49%	3160.8	6.71%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-3.696e-01	1.0000	58.0	2.19%	1092.1	2.32%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.689e-01	1.0000	357.0	13.47%	6491.1	13.79%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.644e-01	1.0000	371.0	13.99%	6745.9	14.33%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.575e-01	1.0000	115.0	4.34%	2135.8	4.54%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.482e-01	1.0000	84.0	3.17%	1574.9	3.34%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-3.458e-01	1.0000	245.0	9.24%	4491.2	9.54%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-3.212e-01	1.0000	1883.0	71.03%	33681.1	71.53%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-3.146e-01	1.0000	609.0	22.97%	11046.4	23.46%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-3.019e-01	1.0000	37.0	1.40%	722.7	1.53%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.999e-01	1.0000	165.0	6.22%	3069.5	6.52%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.976e-01	1.0000	760.0	28.67%	13761.7	29.23%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-2.969e-01	1.0000	181.0	6.83%	3361.3	7.14%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.916e-01	1.0000	50.0	1.89%	967.8	2.06%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-2.905e-01	1.0000	131.0	4.94%	2455.0	5.21%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-2.824e-01	1.0000	337.0	12.71%	6190.9	13.15%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-2.788e-01	1.0000	354.0	13.35%	6499.4	13.80%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-2.725e-01	1.0000	610.0	23.01%	11102.0	23.58%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.648e-01	1.0000	639.0	24.10%	11629.2	24.70%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.644e-01	1.0000	7.0	0.26%	155.4	0.33%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-2.581e-01	1.0000	137.0	5.17%	2581.3	5.48%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-2.559e-01	1.0000	75.0	2.83%	1443.6	3.07%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.504e-01	1.0000	494.0	18.63%	9042.3	19.20%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.462e-01	1.0000	46.0	1.74%	907.7	1.93%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-2.428e-01	1.0000	456.0	17.20%	8366.6	17.77%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-2.421e-01	1.0000	495.0	18.67%	9068.3	19.26%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.277e-01	1.0000	73.0	2.75%	1418.0	3.01%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-2.117e-01	1.0000	193.0	7.28%	3633.8	7.72%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-2.066e-01	1.0000	94.0	3.55%	1818.2	3.86%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.041e-01	1.0000	548.0	20.67%	10061.1	21.37%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.960e-01	1.0000	1721.0	64.92%	30958.3	65.75%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.929e-01	1.0000	43.0	1.62%	870.1	1.85%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.916e-01	1.0000	22.0	0.83%	467.5	0.99%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.879e-01	1.0000	368.0	13.88%	6833.7	14.51%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.876e-01	1.0000	677.0	25.54%	12398.9	26.33%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-1.864e-01	1.0000	18.0	0.68%	390.5	0.83%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.836e-01	1.0000	169.0	6.37%	3215.3	6.83%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.823e-01	1.0000	29.0	1.09%	606.5	1.29%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.764e-01	1.0000	142.0	5.36%	2724.9	5.79%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.686e-01	1.0000	555.0	20.94%	10231.6	21.73%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.635e-01	1.0000	1528.0	57.64%	27595.5	58.61%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-1.627e-01	1.0000	689.0	25.99%	12648.7	26.86%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.625e-01	1.0000	37.0	1.40%	768.2	1.63%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.619e-01	1.0000	482.0	18.18%	8924.3	18.95%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.596e-01	1.0000	317.0	11.96%	5939.2	12.61%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-1.564e-01	1.0000	413.0	15.58%	7684.1	16.32%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-1.507e-01	1.0000	1180.0	44.51%	21441.1	45.54%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.484e-01	1.0000	29.0	1.09%	619.5	1.32%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-1.444e-01	1.0000	218.0	8.22%	4149.8	8.81%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.398e-01	1.0000	716.0	27.01%	13170.0	27.97%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.376e-01	1.0000	818.0	30.86%	15002.7	31.86%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-1.352e-01	1.0000	150.0	5.66%	2907.0	6.17%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.329e-01	1.0000	1.0	0.04%	37.1	0.08%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.313e-01	1.0000	2172.0	81.93%	38969.4	82.77%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-1.219e-01	1.0000	6.0	0.23%	160.2	0.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.180e-01	1.0000	390.0	14.71%	7321.7	15.55%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.161e-01	1.0000	79.0	2.98%	1596.4	3.39%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.112e-01	1.0000	1419.0	53.53%	25764.5	54.72%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.042e-01	1.0000	81.0	3.06%	1644.9	3.49%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.033e-01	1.0000	41.0	1.55%	877.3	1.86%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.024e-01	1.0000	60.0	2.26%	1245.4	2.65%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.003e-01	1.0000	45.0	1.70%	958.0	2.03%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-9.898e-02	1.0000	93.0	3.51%	1876.9	3.99%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-9.880e-02	1.0000	202.0	7.62%	3909.8	8.30%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-9.533e-02	1.0000	215.0	8.11%	4154.8	8.82%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-9.302e-02	1.0000	1676.0	63.22%	30349.6	64.46%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-8.531e-02	1.0000	20.0	0.75%	470.5	1.00%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.579e-02	1.0000	2.0	0.08%	76.8	0.16%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-7.551e-02	1.0000	398.0	15.01%	7546.6	16.03%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-7.295e-02	1.0000	42.0	1.58%	920.5	1.95%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-6.916e-02	1.0000	655.0	24.71%	12224.1	25.96%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-6.678e-02	1.0000	5.0	0.19%	155.6	0.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-6.421e-02	1.0000	810.0	30.55%	15031.5	31.92%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-6.337e-02	1.0000	385.0	14.52%	7338.2	15.59%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-6.181e-02	1.0000	666.0	25.12%	12445.7	26.43%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-5.114e-02	1.0000	873.0	32.93%	16210.2	34.43%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-4.775e-02	1.0000	149.0	5.62%	3008.4	6.39%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.682e-02	1.0000	636.0	23.99%	11956.8	25.39%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-4.450e-02	1.0000	632.0	23.84%	11893.2	25.26%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.258e-02	1.0000	1068.0	40.29%	19741.0	41.93%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-4.111e-02	1.0000	1211.0	45.68%	22298.0	47.36%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-3.979e-02	1.0000	572.0	21.58%	10825.4	22.99%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-3.868e-02	1.0000	489.0	18.45%	9319.9	19.79%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-3.827e-02	1.0000	253.0	9.54%	4981.0	10.58%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-3.761e-02	1.0000	221.0	8.34%	4386.1	9.32%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-3.714e-02	1.0000	555.0	20.94%	10528.3	22.36%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-3.461e-02	1.0000	16.0	0.60%	426.7	0.91%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-3.369e-02	1.0000	154.0	5.81%	3139.8	6.67%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-3.350e-02	1.0000	1140.0	43.00%	21074.7	44.76%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.302e-02	1.0000	155.0	5.85%	3160.4	6.71%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-2.741e-02	1.0000	127.0	4.79%	2645.7	5.62%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.370e-02	1.0000	71.0	2.68%	1570.2	3.33%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.334e-02	1.0000	490.0	18.48%	9418.3	20.00%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-2.143e-02	1.0000	219.0	8.26%	4414.8	9.38%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-2.122e-02	1.0000	389.0	14.67%	7577.7	16.09%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-2.020e-02	1.0000	1174.0	44.29%	21778.2	46.25%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.923e-02	1.0000	1755.0	66.20%	32050.0	68.07%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.910e-02	1.0000	951.0	35.87%	17800.3	37.81%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.866e-02	1.0000	794.0	29.95%	14978.5	31.81%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.843e-02	1.0000	37.0	1.40%	900.2	1.91%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.824e-02	1.0000	15.0	0.57%	430.0	0.91%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.580e-02	1.0000	95.0	3.58%	2072.2	4.40%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.570e-02	1.0000	323.0	12.18%	6395.8	13.58%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-1.543e-02	1.0000	1091.0	41.15%	20346.9	43.21%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.491e-02	1.0000	121.0	4.56%	2583.1	5.49%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.398e-02	1.0000	25.0	0.94%	660.7	1.40%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.382e-02	1.0000	142.0	5.36%	2995.3	6.36%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.289e-02	1.0000	19.0	0.72%	532.8	1.13%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.131e-02	1.0000	256.0	9.66%	5181.5	11.00%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.097e-02	1.0000	2.0	0.08%	116.3	0.25%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-8.418e-03	1.0000	166.0	6.26%	3501.8	7.44%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-8.345e-03	1.0000	2309.0	87.10%	41708.7	88.58%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-8.197e-03	1.0000	902.0	34.02%	17063.3	36.24%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-7.937e-03	1.0000	813.0	30.67%	15462.7	32.84%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-7.533e-03	1.0000	211.0	7.96%	4372.9	9.29%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.640e-03	1.0000	90.0	3.39%	2036.8	4.33%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-6.083e-03	1.0000	90.0	3.39%	2042.9	4.34%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.645e-03	1.0000	114.0	4.30%	2523.2	5.36%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-5.229e-03	1.0000	300.0	11.32%	6093.4	12.94%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.837e-03	1.0000	943.0	35.57%	17884.6	37.98%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-4.187e-03	1.0000	18.0	0.68%	552.1	1.17%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-4.161e-03	1.0000	11.0	0.41%	385.8	0.82%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-4.130e-03	1.0000	379.0	14.30%	7599.0	16.14%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-4.080e-03	1.0000	807.0	30.44%	15454.9	32.82%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-3.858e-03	1.0000	547.0	20.63%	10718.7	22.76%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-3.798e-03	1.0000	348.0	13.13%	7029.0	14.93%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-3.272e-03	1.0000	323.0	12.18%	6576.1	13.97%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-3.137e-03	1.0000	455.0	17.16%	9045.1	19.21%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.717e-03	1.0000	26.0	0.98%	751.1	1.60%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.652e-03	1.0000	479.0	18.07%	9510.4	20.20%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-1.966e-03	1.0000	142.0	5.36%	3153.7	6.70%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.945e-03	1.0000	1716.0	64.73%	31714.1	67.36%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.747e-03	1.0000	233.0	8.79%	4929.5	10.47%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.713e-03	1.0000	300.0	11.32%	6208.3	13.19%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.511e-03	1.0000	455.0	17.16%	9130.6	19.39%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.059e-03	1.0000	751.0	28.33%	14620.5	31.05%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-8.590e-04	1.0000	802.0	30.25%	15575.9	33.08%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-5.800e-04	1.0000	323.0	12.18%	6748.6	14.33%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-5.530e-04	1.0000	102.0	3.85%	2437.8	5.18%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.950e-04	1.0000	480.0	18.11%	9813.1	20.84%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.550e-04	1.0000	1395.0	52.62%	26408.0	56.09%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-1.290e-04	1.0000	731.0	27.57%	14502.8	30.80%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.200e-04	1.0000	397.0	14.98%	8298.0	17.62%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.000e-05	1.0000	13.0	0.49%	565.1	1.20%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.000e-06	1.0000	1219.0	45.98%	23812.3	50.57%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-0.000e+00	1.0000	593.0	22.37%	12588.7	26.74%