Information for 1-GGGGGCGTCTAG (Motif 1)


Reverse Opposite:

p-value:1e-11
log p-value:-2.761e+01
Information Content per bp:1.919
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.60%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets88.5 +/- 74.8bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0143.1_Klf7_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---GGGGGCGTCTAG--
NNNTNGGGCGTATNNTN

PB0076.1_Sp4_1/Jaspar

Match Rank:2
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCGTCTAG
NNNAAGGGGGCGGGNNN

PB0010.1_Egr1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:reverse strand
Alignment:-----GGGGGCGTCTAG
ANTGCGGGGGCGGN---

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GGGGGCGTCTAG
NGCGTGGGCGGR---

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:GGGGGCGTCTAG
--VBSYGTCTGG

PB0025.1_Glis2_1/Jaspar

Match Rank:6
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GGGGGCGTCTAG-
NTNTGGGGGGTCNNNA

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GGGGGCGTCTAG
TGCGTGGGYG-----

MA0472.1_EGR2/Jaspar

Match Rank:8
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGGGGCGTCTAG
GTGCGTGGGCGGGNG-

MA0155.1_INSM1/Jaspar

Match Rank:9
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----GGGGGCGTCTAG
TGTCAGGGGGCG-----

PB0110.1_Bcl6b_2/Jaspar

Match Rank:10
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----GGGGGCGTCTAG
NNTNAGGGGCGGNNNN