Information for 2-CTAGGCTT (Motif 11)


Reverse Opposite:

p-value:1e-5
log p-value:-1.183e+01
Information Content per bp:1.804
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif13.51%
Number of Background Sequences with motif1704.6
Percentage of Background Sequences with motif3.47%
Average Position of motif in Targets129.8 +/- 68.7bp
Average Position of motif in Background126.0 +/- 73.6bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.27
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAGGCTT
CNAGGCCT

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CTAGGCTT
CTAGGCCT

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTAGGCTT-----
CTACTAGGATGTNNTN

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:CTAGGCTT-
-NGGGATTA

MA0164.1_Nr2e3/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTAGGCTT-
--AAGCTTG

MA0146.2_Zfx/Jaspar

Match Rank:6
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----CTAGGCTT-
GGGGCCGAGGCCTG

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:7
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:CTAGGCTT---
---GGATTAGC

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CTAGGCTT---
-VRGGATTARN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:reverse strand
Alignment:---CTAGGCTT
NNACTTGCCTT

MA0009.1_T/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:forward strand
Alignment:CTAGGCTT---
CTAGGTGTGAA