Information for 6-AWCATGTTYT (Motif 12)


Reverse Opposite:

p-value:1e-5
log p-value:-1.158e+01
Information Content per bp:1.794
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif5.41%
Number of Background Sequences with motif210.8
Percentage of Background Sequences with motif0.43%
Average Position of motif in Targets135.1 +/- 65.7bp
Average Position of motif in Background125.9 +/- 77.4bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0086.1_Irx5/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:reverse strand
Alignment:-----AWCATGTTYT--
ANTNNTACATGTANNTN

PH0085.1_Irx4/Jaspar

Match Rank:2
Score:0.71
Offset:-5
Orientation:reverse strand
Alignment:-----AWCATGTTYT--
NNTTTTACATGTANNNT

PH0082.1_Irx2/Jaspar

Match Rank:3
Score:0.69
Offset:-5
Orientation:reverse strand
Alignment:-----AWCATGTTYT--
ANTNTTACATGTATNTA

PH0084.1_Irx3_2/Jaspar

Match Rank:4
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AWCATGTTYT---
AATATACATGTAATATA

PH0083.1_Irx3_1/Jaspar

Match Rank:5
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----AWCATGTTYT---
AAAATACATGTAATACT

PB0141.1_Isgf3g_2/Jaspar

Match Rank:6
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--AWCATGTTYT--
NNGTANTGTTTTNC

PH0087.1_Irx6/Jaspar

Match Rank:7
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----AWCATGTTYT--
ANTTNTACATGTANTTN

MA0058.2_MAX/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AWCATGTTYT-
-CCATGTGCTT

POL005.1_DPE/Jaspar

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:AWCATGTTYT
NACATCTTN-

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--AWCATGTTYT
GKVTCADRTTWC