Information for 1-GGAGCATTGA (Motif 2)


Reverse Opposite:

p-value:1e-10
log p-value:-2.383e+01
Information Content per bp:1.869
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif8.11%
Number of Background Sequences with motif139.7
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets131.2 +/- 59.4bp
Average Position of motif in Background120.7 +/- 77.7bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0099.1_Zfp691_1/Jaspar

Match Rank:1
Score:0.72
Offset:-4
Orientation:reverse strand
Alignment:----GGAGCATTGA---
NNNNTGAGCACTGTNNG

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:2
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCATTGA
GGGAGGACNG-

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GGAGCATTGA
CGGAGC-----

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GGAGCATTGA
-CAGCC----

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:5
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GGAGCATTGA---
---NTATYGATCH

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GGAGCATTGA-------
NNNNNATTGATGNGTGN

MA0017.1_NR2F1/Jaspar

Match Rank:7
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GGAGCATTGA----
TGACCTTTGAACCT

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:8
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GGAGCATTGA----
AGGTCANTGACCTN

PH0041.1_Hmx1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGAGCATTGA------
ACAAGCAATTAATGAAT

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:GGAGCATTGA---
---GCAGTGATTT