Information for 2-CTTGGTGACA (Motif 4)


Reverse Opposite:

p-value:1e-9
log p-value:-2.135e+01
Information Content per bp:1.842
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif9.91%
Number of Background Sequences with motif347.6
Percentage of Background Sequences with motif0.71%
Average Position of motif in Targets105.0 +/- 69.6bp
Average Position of motif in Background135.6 +/- 73.5bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:CTTGGTGACA--
GGTGYTGACAGS

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.71
Offset:-7
Orientation:forward strand
Alignment:-------CTTGGTGACA------
ACTGACCCTTGGTTACCACAAAG

PB0041.1_Mafb_1/Jaspar

Match Rank:3
Score:0.66
Offset:-3
Orientation:forward strand
Alignment:---CTTGGTGACA----
AAATTTGCTGACTTAGA

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CTTGGTGACA---
---VBTGWCAGCB

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:5
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CTTGGTGACA--
--TGCTGACTCA

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTTGGTGACA--
CNTGTTTACATA

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---CTTGGTGACA----
CTACTTGGATACGGAAT

MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGTGACA--
AAAWWTGCTGACWWD

PB0159.1_Rfx4_2/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CTTGGTGACA--
TACCCTAGTTACCGA

MA0496.1_MAFK/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTTGGTGACA---
AAANTGCTGACTNAG