Information for 3-CGGTGCAGGAAA (Motif 5)


Reverse Opposite:

p-value:1e-8
log p-value:-1.883e+01
Information Content per bp:1.923
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif3.60%
Number of Background Sequences with motif9.6
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets89.2 +/- 61.2bp
Average Position of motif in Background126.5 +/- 101.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:1
Score:0.75
Offset:3
Orientation:reverse strand
Alignment:CGGTGCAGGAAA-
---NACAGGAAAT

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:2
Score:0.73
Offset:3
Orientation:forward strand
Alignment:CGGTGCAGGAAA-
---NACAGGAAAT

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:3
Score:0.70
Offset:4
Orientation:forward strand
Alignment:CGGTGCAGGAAA--
----ACAGGAAGTG

MA0156.1_FEV/Jaspar

Match Rank:4
Score:0.69
Offset:5
Orientation:forward strand
Alignment:CGGTGCAGGAAA-
-----CAGGAAAT

MA0474.1_Erg/Jaspar

Match Rank:5
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CGGTGCAGGAAA---
----ACAGGAAGTGG

MA0475.1_FLI1/Jaspar

Match Rank:6
Score:0.65
Offset:4
Orientation:forward strand
Alignment:CGGTGCAGGAAA---
----ACAGGAAGTGG

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CGGTGCAGGAAA-
---AVCAGGAAGT

MA0098.2_Ets1/Jaspar

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CGGTGCAGGAAA----
-NNNACAGGAAGTGGN

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:9
Score:0.63
Offset:4
Orientation:reverse strand
Alignment:CGGTGCAGGAAA--
----DCCGGAARYN

MA0028.1_ELK1/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:forward strand
Alignment:CGGTGCAGGAAA
--GAGCCGGAAG