| p-value: | 1e-6 |
| log p-value: | -1.607e+01 |
| Information Content per bp: | 1.913 |
| Number of Target Sequences with motif | 10.0 |
| Percentage of Target Sequences with motif | 9.01% |
| Number of Background Sequences with motif | 457.0 |
| Percentage of Background Sequences with motif | 0.93% |
| Average Position of motif in Targets | 140.1 +/- 54.5bp |
| Average Position of motif in Background | 126.0 +/- 75.0bp |
| Strand Bias (log2 ratio + to - strand density) | 0.6 |
| Multiplicity (# of sites on avg that occur together) | 1.00 |
| Motif File: | file (matrix)
reverse opposite |
| PDF Format Logos: | forward logo
reverse opposite |
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer
| Match Rank: | 1 |
| Score: | 0.78
| | Offset: | -1
| | Orientation: | forward strand |
| Alignment: | -ATAATGGT
GKTAATGR- |
|
|
|
PB0132.1_Hbp1_2/Jaspar
| Match Rank: | 2 |
| Score: | 0.76
| | Offset: | -5
| | Orientation: | reverse strand |
| Alignment: | -----ATAATGGT----
NNTNNACAATGGGANNN |
|
|
|
MA0143.3_Sox2/Jaspar
| Match Rank: | 3 |
| Score: | 0.74
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -ATAATGGT
AACAAAGG- |
|
|
|
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer
| Match Rank: | 4 |
| Score: | 0.72
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -ATAATGGT
RACAAWGG- |
|
|
|
MA0077.1_SOX9/Jaspar
| Match Rank: | 5 |
| Score: | 0.71
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --ATAATGGT
GAACAATGG- |
|
|
|
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer
| Match Rank: | 6 |
| Score: | 0.70
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --ATAATGGT
GAACAATGGN |
|
|
|
PB0135.1_Hoxa3_2/Jaspar
| Match Rank: | 7 |
| Score: | 0.69
| | Offset: | -2
| | Orientation: | reverse strand |
| Alignment: | --ATAATGGT----
CCTTAATNGNTTTT |
|
|
|
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer
| Match Rank: | 8 |
| Score: | 0.69
| | Offset: | -1
| | Orientation: | reverse strand |
| Alignment: | -ATAATGGT-
GTTAATGGCC |
|
|
|
MA0515.1_Sox6/Jaspar
| Match Rank: | 9 |
| Score: | 0.69
| | Offset: | -3
| | Orientation: | reverse strand |
| Alignment: | ---ATAATGGT
AAAACAATGG- |
|
|
|
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer
| Match Rank: | 10 |
| Score: | 0.68
| | Offset: | 0
| | Orientation: | forward strand |
| Alignment: | ATAATGGT
CTAATKGV |
|
|
|
