Information for 4-CTHCGAGGAA (Motif 7)


Reverse Opposite:

p-value:1e-6
log p-value:-1.578e+01
Information Content per bp:1.820
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif4.50%
Number of Background Sequences with motif51.5
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets118.6 +/- 54.2bp
Average Position of motif in Background122.5 +/- 76.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0518.1_Stat4/Jaspar

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTHCGAGGAA----
TTTCCAGGAAATGG

Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer

Match Rank:2
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CTHCGAGGAA
CTTCCNGGAA

STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:CTHCGAGGAA--
TTTCCNGGAAAN

Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer

Match Rank:4
Score:0.68
Offset:-1
Orientation:reverse strand
Alignment:-CTHCGAGGAA---
NCTTCCNGGAAGNN

MA0144.2_STAT3/Jaspar

Match Rank:5
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTHCGAGGAA-
CTTCTGGGAAA

MA0137.3_STAT1/Jaspar

Match Rank:6
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CTHCGAGGAA-
TTTCCAGGAAA

PB0006.1_Bcl6b_1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--CTHCGAGGAA----
TCTTTCGAGGAATTTG

PB0032.1_IRC900814_1/Jaspar

Match Rank:8
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CTHCGAGGAA----
ATTTACGACAAATAGC

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:9
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----CTHCGAGGAA-
NNNCTTTCCAGGAAA

MA0463.1_Bcl6/Jaspar

Match Rank:10
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CTHCGAGGAA-
NGCTTTCTAGGAAN