Information for 4-GGTGTCTTAAGA (Motif 8)


Reverse Opposite:

p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.919
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif2.70%
Number of Background Sequences with motif6.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets147.8 +/- 81.6bp
Average Position of motif in Background133.3 +/- 90.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0164.1_Six4/Jaspar

Match Rank:1
Score:0.62
Offset:-5
Orientation:reverse strand
Alignment:-----GGTGTCTTAAGA
TNNNNGGTGTCATNTNT

Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCTTAAGA
AGGTGTCA-----

PH0065.1_Hoxc10/Jaspar

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCTTAAGA---
TAAAGTCGTAAAACGT

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GGTGTCTTAAGA-
---GTCACATGAY

PH0047.1_Hoxa11/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCTTAAGA---
TAAAGTCGTAAAACAT

PH0066.1_Hoxc11/Jaspar

Match Rank:6
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCTTAAGA---
TAAAGTCGTAAAATAG

PH0076.1_Hoxd11/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCTTAAGA----
TAAGGTCGTAAAATCCT

PB0025.1_Glis2_1/Jaspar

Match Rank:8
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GGTGTCTTAAGA
NTNTGGGGGGTCNNNA--

PB0203.1_Zfp691_2/Jaspar

Match Rank:9
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------GGTGTCTTAAGA
NTNNNAGGAGTCTCNTN-

PH0077.1_Hoxd12/Jaspar

Match Rank:10
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-GGTGTCTTAAGA----
CAAGGTCGTAAAATCTT