Information for 5-AGACSGGRAG (Motif 9)


Reverse Opposite:

p-value:1e-5
log p-value:-1.288e+01
Information Content per bp:1.771
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif9.01%
Number of Background Sequences with motif653.0
Percentage of Background Sequences with motif1.33%
Average Position of motif in Targets112.6 +/- 71.6bp
Average Position of motif in Background130.2 +/- 78.6bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0020.1_Gabpa_1/Jaspar

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--AGACSGGRAG-----
CAATACCGGAAGTGTAA

MF0001.1_ETS_class/Jaspar

Match Rank:2
Score:0.74
Offset:2
Orientation:forward strand
Alignment:AGACSGGRAG
--ACCGGAAG

ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer

Match Rank:3
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGACSGGRAG-
-AACCGGAAGT

GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer

Match Rank:4
Score:0.71
Offset:1
Orientation:forward strand
Alignment:AGACSGGRAG-
-NACCGGAAGT

PB0140.1_Irf6_2/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AGACSGGRAG----
NNNACCGAGAGTNNN

ETS(ETS)/Promoter/Homer

Match Rank:6
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGACSGGRAG-
-AACCGGAAGT

MA0076.2_ELK4/Jaspar

Match Rank:7
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:AGACSGGRAG---
--NCCGGAAGTGG

ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.67
Offset:1
Orientation:forward strand
Alignment:AGACSGGRAG-
-ANCCGGAAGT

Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:AGACSGGRAG--
--RCCGGAAGTD

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:10
Score:0.66
Offset:2
Orientation:forward strand
Alignment:AGACSGGRAG--
--ACAGGAAGTG