Information for 15-GGARCAGCACCC (Motif 11)


Reverse Opposite:

p-value:1e-5
log p-value:-1.285e+01
Information Content per bp:1.896
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif47.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets230.9 +/- 139.1bp
Average Position of motif in Background224.1 +/- 160.6bp
Strand Bias (log2 ratio + to - strand density)5.6
Multiplicity (# of sites on avg that occur together)5.56
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---GGARCAGCACCC
CCAGGAACAG-----

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:2
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---GGARCAGCACCC
ADGGYAGYAGCATCT

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGARCAGCACCC
GGGAGGACNG---

PB0130.1_Gm397_2/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGARCAGCACCC------
--AGCGGCACACACGCAA

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:5
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGARCAGCACCC--
--GGCCACACCCAN

MA0493.1_Klf1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:forward strand
Alignment:GGARCAGCACCC-
--GGCCACACCCA

POL013.1_MED-1/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GGARCAGCACCC
CGGAGC-------

MA0039.2_Klf4/Jaspar

Match Rank:8
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:GGARCAGCACCC-
---GCCCCACCCA

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.53
Offset:3
Orientation:forward strand
Alignment:GGARCAGCACCC-
---GCCACACCCA

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GGARCAGCACCC
--CACAGN----