Information for 23-CTTGGCTGGC (Motif 19)


Reverse Opposite:

p-value:1e-2
log p-value:-5.083e+00
Information Content per bp:1.962
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.78%
Number of Background Sequences with motif137.8
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets271.4 +/- 149.1bp
Average Position of motif in Background239.7 +/- 127.4bp
Strand Bias (log2 ratio + to - strand density)3.9
Multiplicity (# of sites on avg that occur together)5.33
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CTTGGCTGGC
-TWGTCTGV-

MA0161.1_NFIC/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CTTGGCTGGC
-TTGGCA---

PB0029.1_Hic1_1/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTTGGCTGGC-----
NGTAGGTTGGCATNNN

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCTGGC
NNACTTGCCTT--

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.61
Offset:-6
Orientation:forward strand
Alignment:------CTTGGCTGGC
GTCATGCHTGRCTGS-

POL010.1_DCE_S_III/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:CTTGGCTGGC
---NGCTN--

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CTTGGCTGGC
-CTGTCTGG-

PB0060.1_Smad3_1/Jaspar

Match Rank:8
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---CTTGGCTGGC----
NNTNNTGTCTGGNNTNG

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CTTGGCTGGC----
--TGTCTGDCACCT

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CTTGGCTGGC--
--GGTCTGGCAT