Information for 13-GAGCATCYGACA (Motif 6)


Reverse Opposite:

p-value:1e-7
log p-value:-1.665e+01
Information Content per bp:1.910
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif4.5
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets343.8 +/- 91.3bp
Average Position of motif in Background152.9 +/- 106.8bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.80
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:1
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCYGACA--
CCNNACCATCTGGCCTN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.56
Offset:1
Orientation:forward strand
Alignment:GAGCATCYGACA
-ANCAGCTG---

PB0149.1_Myb_2/Jaspar

Match Rank:3
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCYGACA---
CGACCAACTGCCATGC

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:4
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCYGACA
CGACCATCTGTT-

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:5
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGCATCYGACA-
-GCCAGCTGBTNB

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:6
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GAGCATCYGACA-
-NVCAGCTGBBNN

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:GAGCATCYGACA
-RTCATGTGAC-

PB0003.1_Ascl2_1/Jaspar

Match Rank:8
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCYGACA--
NNNNAGCAGCTGCTGAN

MA0100.2_Myb/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GAGCATCYGACA
--CCAACTGCCA

PH0141.1_Pknox2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:forward strand
Alignment:GAGCATCYGACA----
AAGCACCTGTCAATAT