Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 1148)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 48489)	% of Background Sequences with Motif
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-2	-6.103e+00	0.5904	42.0	3.66%	1100.7	2.27%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-2	-5.607e+00	0.5904	56.0	4.88%	1614.0	3.33%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e-2	-4.676e+00	0.8194	351.0	30.57%	13266.0	27.41%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e-1	-4.517e+00	0.8194	355.0	30.92%	13466.4	27.82%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e-1	-4.422e+00	0.8194	26.0	2.26%	672.1	1.39%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e-1	-4.369e+00	0.8194	257.0	22.39%	9528.1	19.68%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e-1	-4.062e+00	0.8194	63.0	5.49%	2011.4	4.16%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e-1	-3.942e+00	0.8194	357.0	31.10%	13692.7	28.29%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e-1	-3.651e+00	0.8194	106.0	9.23%	3695.1	7.63%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e-1	-3.473e+00	0.8194	606.0	52.79%	24197.2	49.99%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-3.287e+00	0.8968	405.0	35.28%	15855.5	32.76%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e-1	-3.127e+00	0.9650	124.0	10.80%	4489.6	9.28%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e-1	-3.083e+00	0.9650	86.0	7.49%	3012.8	6.22%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-3.083e+00	0.9650	99.0	8.62%	3518.0	7.27%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e-1	-3.075e+00	0.9650	119.0	10.37%	4303.0	8.89%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e-1	-3.049e+00	0.9650	72.0	6.27%	2478.2	5.12%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e-1	-3.007e+00	0.9650	114.0	9.93%	4118.4	8.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e-1	-2.867e+00	0.9650	259.0	22.56%	9979.0	20.62%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e-1	-2.784e+00	0.9650	93.0	8.10%	3335.7	6.89%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e-1	-2.657e+00	0.9650	48.0	4.18%	1617.4	3.34%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e-1	-2.605e+00	0.9650	22.0	1.92%	660.8	1.37%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-2.603e+00	0.9650	55.0	4.79%	1891.8	3.91%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e-1	-2.585e+00	0.9650	121.0	10.54%	4480.0	9.26%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e-1	-2.579e+00	0.9650	337.0	29.36%	13271.7	27.42%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e-1	-2.575e+00	0.9650	144.0	12.54%	5401.7	11.16%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e-1	-2.565e+00	0.9650	200.0	17.42%	7663.6	15.83%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e-1	-2.506e+00	0.9650	148.0	12.89%	5578.3	11.52%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.480e+00	0.9650	30.0	2.61%	963.4	1.99%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e-1	-2.444e+00	0.9650	12.0	1.05%	322.2	0.67%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e-1	-2.312e+00	0.9650	147.0	12.80%	5586.6	11.54%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-2.176e+00	0.9664	24.0	2.09%	772.1	1.60%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-2.155e+00	0.9664	219.0	19.08%	8559.3	17.68%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-2.153e+00	0.9664	126.0	10.98%	4780.4	9.88%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-2.129e+00	0.9664	319.0	27.79%	12686.1	26.21%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-2.080e+00	0.9664	94.0	8.19%	3514.8	7.26%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.013e+00	0.9792	52.0	4.53%	1865.7	3.85%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-1.952e+00	1.0000	166.0	14.46%	6458.0	13.34%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-1.925e+00	1.0000	728.0	63.41%	29942.2	61.86%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-1.903e+00	1.0000	76.0	6.62%	2834.6	5.86%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.884e+00	1.0000	151.0	13.15%	5866.8	12.12%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-1.864e+00	1.0000	22.0	1.92%	731.0	1.51%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-1.851e+00	1.0000	281.0	24.48%	11220.5	23.18%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.738e+00	1.0000	376.0	32.75%	15215.8	31.44%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-1.732e+00	1.0000	80.0	6.97%	3032.2	6.26%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.620e+00	1.0000	355.0	30.92%	14393.7	29.74%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.601e+00	1.0000	68.0	5.92%	2581.0	5.33%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.596e+00	1.0000	114.0	9.93%	4444.5	9.18%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.518e+00	1.0000	95.0	8.28%	3693.6	7.63%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-1.512e+00	1.0000	67.0	5.84%	2560.0	5.29%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.498e+00	1.0000	194.0	16.90%	7762.7	16.04%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.478e+00	1.0000	24.0	2.09%	854.6	1.77%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-1.459e+00	1.0000	70.0	6.10%	2694.9	5.57%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-1.453e+00	1.0000	32.0	2.79%	1172.8	2.42%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-1.411e+00	1.0000	155.0	13.50%	6186.1	12.78%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.397e+00	1.0000	30.0	2.61%	1102.1	2.28%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.392e+00	1.0000	49.0	4.27%	1862.9	3.85%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.370e+00	1.0000	333.0	29.01%	13596.9	28.09%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.343e+00	1.0000	92.0	8.01%	3622.0	7.48%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.302e+00	1.0000	64.0	5.57%	2490.4	5.15%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.283e+00	1.0000	207.0	18.03%	8390.7	17.34%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.282e+00	1.0000	139.0	12.11%	5574.6	11.52%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.251e+00	1.0000	65.0	5.66%	2544.4	5.26%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-1.237e+00	1.0000	343.0	29.88%	14084.9	29.10%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.154e+00	1.0000	190.0	16.55%	7742.7	16.00%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-1.144e+00	1.0000	6.0	0.52%	195.0	0.40%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.109e+00	1.0000	778.0	67.77%	32484.9	67.11%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.096e+00	1.0000	589.0	51.31%	24507.6	50.63%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.083e+00	1.0000	15.0	1.31%	554.9	1.15%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.039e+00	1.0000	42.0	3.66%	1658.4	3.43%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.020e+00	1.0000	24.0	2.09%	927.3	1.92%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.018e+00	1.0000	267.0	23.26%	11027.4	22.78%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.014e+00	1.0000	235.0	20.47%	9690.1	20.02%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.001e+00	1.0000	153.0	13.33%	6272.1	12.96%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-9.878e-01	1.0000	385.0	33.54%	15995.0	33.05%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-9.873e-01	1.0000	48.0	4.18%	1918.2	3.96%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-9.832e-01	1.0000	372.0	32.40%	15452.2	31.92%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-9.814e-01	1.0000	16.0	1.39%	609.0	1.26%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-9.521e-01	1.0000	96.0	8.36%	3919.7	8.10%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.395e-01	1.0000	64.0	5.57%	2594.7	5.36%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-9.191e-01	1.0000	28.0	2.44%	1111.5	2.30%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-9.111e-01	1.0000	161.0	14.02%	6650.5	13.74%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-9.097e-01	1.0000	32.0	2.79%	1278.8	2.64%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-9.002e-01	1.0000	141.0	12.28%	5819.2	12.02%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-8.990e-01	1.0000	90.0	7.84%	3690.9	7.63%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-8.740e-01	1.0000	107.0	9.32%	4410.9	9.11%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-8.691e-01	1.0000	43.0	3.75%	1744.8	3.60%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-8.527e-01	1.0000	40.0	3.48%	1624.1	3.36%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-8.460e-01	1.0000	8.0	0.70%	303.4	0.63%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-8.395e-01	1.0000	18.0	1.57%	715.5	1.48%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-8.382e-01	1.0000	165.0	14.37%	6856.6	14.17%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-8.262e-01	1.0000	77.0	6.71%	3176.6	6.56%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.147e-01	1.0000	74.0	6.45%	3055.5	6.31%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-7.849e-01	1.0000	48.0	4.18%	1978.9	4.09%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-7.685e-01	1.0000	81.0	7.06%	3367.5	6.96%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-7.601e-01	1.0000	67.0	5.84%	2783.7	5.75%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-7.499e-01	1.0000	86.0	7.49%	3586.0	7.41%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-7.405e-01	1.0000	180.0	15.68%	7543.6	15.58%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-7.357e-01	1.0000	9.0	0.78%	359.1	0.74%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-7.210e-01	1.0000	150.0	13.07%	6292.0	13.00%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-7.135e-01	1.0000	3.0	0.26%	111.4	0.23%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-7.088e-01	1.0000	234.0	20.38%	9838.3	20.33%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-7.070e-01	1.0000	45.0	3.92%	1878.2	3.88%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-7.002e-01	1.0000	226.0	19.69%	9507.9	19.64%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-6.969e-01	1.0000	49.0	4.27%	2050.0	4.24%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-6.948e-01	1.0000	119.0	10.37%	5001.5	10.33%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-6.880e-01	1.0000	241.0	20.99%	10148.9	20.97%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.782e-01	1.0000	3.0	0.26%	115.0	0.24%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-6.782e-01	1.0000	509.0	44.34%	21455.0	44.33%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-6.507e-01	1.0000	207.0	18.03%	8741.5	18.06%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-6.389e-01	1.0000	141.0	12.28%	5962.8	12.32%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-6.383e-01	1.0000	12.0	1.05%	502.2	1.04%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-6.377e-01	1.0000	341.0	29.70%	14406.5	29.76%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-6.367e-01	1.0000	113.0	9.84%	4780.8	9.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-6.274e-01	1.0000	57.0	4.97%	2415.2	4.99%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-6.209e-01	1.0000	113.0	9.84%	4789.7	9.90%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-6.176e-01	1.0000	198.0	17.25%	8385.6	17.32%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-6.103e-01	1.0000	84.0	7.32%	3567.4	7.37%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-6.087e-01	1.0000	267.0	23.26%	11307.7	23.36%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-6.008e-01	1.0000	108.0	9.41%	4589.1	9.48%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-6.005e-01	1.0000	451.0	39.29%	19081.6	39.42%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.806e-01	1.0000	53.0	4.62%	2265.7	4.68%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-5.711e-01	1.0000	210.0	18.29%	8928.8	18.45%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-5.690e-01	1.0000	393.0	34.23%	16664.8	34.43%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-5.629e-01	1.0000	230.0	20.03%	9781.8	20.21%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.626e-01	1.0000	223.0	19.43%	9485.3	19.60%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-5.615e-01	1.0000	123.0	10.71%	5249.4	10.85%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.614e-01	1.0000	142.0	12.37%	6055.1	12.51%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-5.600e-01	1.0000	319.0	27.79%	13547.0	27.99%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-5.593e-01	1.0000	246.0	21.43%	10461.5	21.61%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-5.488e-01	1.0000	172.0	14.98%	7336.9	15.16%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.448e-01	1.0000	134.0	11.67%	5727.0	11.83%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-5.210e-01	1.0000	162.0	14.11%	6933.9	14.33%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-5.150e-01	1.0000	60.0	5.23%	2595.0	5.36%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-5.086e-01	1.0000	92.0	8.01%	3964.7	8.19%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-5.079e-01	1.0000	116.0	10.10%	4987.0	10.30%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-5.075e-01	1.0000	119.0	10.37%	5115.5	10.57%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-4.862e-01	1.0000	406.0	35.37%	17299.9	35.74%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-4.690e-01	1.0000	384.0	33.45%	16388.1	33.86%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.617e-01	1.0000	15.0	1.31%	673.0	1.39%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-4.494e-01	1.0000	162.0	14.11%	6991.7	14.44%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-4.419e-01	1.0000	203.0	17.68%	8743.6	18.06%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.315e-01	1.0000	101.0	8.80%	4400.7	9.09%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-4.233e-01	1.0000	146.0	12.72%	6332.0	13.08%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-4.192e-01	1.0000	72.0	6.27%	3163.5	6.54%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-4.082e-01	1.0000	55.0	4.79%	2436.2	5.03%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-4.048e-01	1.0000	49.0	4.27%	2178.5	4.50%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-4.000e-01	1.0000	43.0	3.75%	1920.7	3.97%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.997e-01	1.0000	63.0	5.49%	2787.4	5.76%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-3.969e-01	1.0000	127.0	11.06%	5541.4	11.45%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-3.865e-01	1.0000	24.0	2.09%	1095.2	2.26%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-3.862e-01	1.0000	108.0	9.41%	4735.8	9.78%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.712e-01	1.0000	81.0	7.06%	3584.6	7.41%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-3.679e-01	1.0000	194.0	16.90%	8434.5	17.43%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.667e-01	1.0000	33.0	2.87%	1500.2	3.10%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-3.609e-01	1.0000	137.0	11.93%	6002.8	12.40%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-3.598e-01	1.0000	109.0	9.49%	4800.2	9.92%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-3.580e-01	1.0000	144.0	12.54%	6305.5	13.03%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-3.487e-01	1.0000	85.0	7.40%	3774.4	7.80%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.345e-01	1.0000	217.0	18.90%	9454.7	19.53%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-3.336e-01	1.0000	24.0	2.09%	1118.1	2.31%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.274e-01	1.0000	390.0	33.97%	16822.6	34.76%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-3.158e-01	1.0000	40.0	3.48%	1836.5	3.79%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-3.063e-01	1.0000	176.0	15.33%	7733.5	15.98%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-3.032e-01	1.0000	217.0	18.90%	9493.2	19.61%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-3.020e-01	1.0000	205.0	17.86%	8981.1	18.55%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-2.923e-01	1.0000	269.0	23.43%	11729.4	24.23%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.878e-01	1.0000	47.0	4.09%	2163.2	4.47%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-2.771e-01	1.0000	149.0	12.98%	6607.1	13.65%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.757e-01	1.0000	894.0	77.87%	38082.1	78.68%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-2.755e-01	1.0000	377.0	32.84%	16351.1	33.78%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-2.691e-01	1.0000	6.0	0.52%	318.7	0.66%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.687e-01	1.0000	156.0	13.59%	6919.4	14.30%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-2.669e-01	1.0000	677.0	58.97%	29030.6	59.98%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-2.616e-01	1.0000	17.0	1.48%	836.9	1.73%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-2.557e-01	1.0000	201.0	17.51%	8872.1	18.33%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-2.393e-01	1.0000	588.0	51.22%	25339.8	52.35%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-2.371e-01	1.0000	32.0	2.79%	1531.2	3.16%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.335e-01	1.0000	22.0	1.92%	1080.5	2.23%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-2.332e-01	1.0000	333.0	29.01%	14553.9	30.07%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-2.257e-01	1.0000	38.0	3.31%	1809.1	3.74%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.239e-01	1.0000	20.0	1.74%	994.5	2.05%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-2.088e-01	1.0000	33.0	2.87%	1597.1	3.30%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.028e-01	1.0000	274.0	23.87%	12090.3	24.98%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.009e-01	1.0000	229.0	19.95%	10163.2	21.00%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.945e-01	1.0000	92.0	8.01%	4234.0	8.75%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-1.925e-01	1.0000	104.0	9.06%	4762.4	9.84%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.922e-01	1.0000	9.0	0.78%	493.4	1.02%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.875e-01	1.0000	18.0	1.57%	924.5	1.91%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.866e-01	1.0000	733.0	63.85%	31533.7	65.15%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.855e-01	1.0000	51.0	4.44%	2428.8	5.02%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.842e-01	1.0000	15.0	1.31%	785.1	1.62%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-1.769e-01	1.0000	41.0	3.57%	1987.9	4.11%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-1.700e-01	1.0000	206.0	17.94%	9231.3	19.07%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.671e-01	1.0000	15.0	1.31%	797.0	1.65%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.671e-01	1.0000	15.0	1.31%	797.0	1.65%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.599e-01	1.0000	179.0	15.59%	8083.0	16.70%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.586e-01	1.0000	822.0	71.60%	35304.7	72.94%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.575e-01	1.0000	23.0	2.00%	1180.8	2.44%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.575e-01	1.0000	598.0	52.09%	25944.2	53.60%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-1.517e-01	1.0000	32.0	2.79%	1602.7	3.31%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.512e-01	1.0000	288.0	25.09%	12801.3	26.45%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.476e-01	1.0000	329.0	28.66%	14566.7	30.09%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.451e-01	1.0000	197.0	17.16%	8894.9	18.38%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-1.379e-01	1.0000	14.0	1.22%	769.4	1.59%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-1.345e-01	1.0000	208.0	18.12%	9395.7	19.41%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.172e-01	1.0000	268.0	23.34%	12033.0	24.86%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-1.129e-01	1.0000	389.0	33.89%	17230.6	35.60%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.112e-01	1.0000	388.0	33.80%	17193.3	35.52%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-1.107e-01	1.0000	1.0	0.09%	95.4	0.20%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.097e-01	1.0000	177.0	15.42%	8111.3	16.76%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-1.084e-01	1.0000	581.0	50.61%	25379.1	52.43%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-9.665e-02	1.0000	81.0	7.06%	3906.3	8.07%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-9.489e-02	1.0000	74.0	6.45%	3595.3	7.43%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-9.385e-02	1.0000	320.0	27.87%	14345.1	29.64%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-9.206e-02	1.0000	274.0	23.87%	12372.5	25.56%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-8.936e-02	1.0000	59.0	5.14%	2927.7	6.05%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-8.861e-02	1.0000	13.0	1.13%	765.5	1.58%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-8.215e-02	1.0000	4.0	0.35%	297.8	0.62%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-8.189e-02	1.0000	209.0	18.21%	9592.4	19.82%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-8.072e-02	1.0000	130.0	11.32%	6131.0	12.67%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-7.982e-02	1.0000	36.0	3.14%	1884.2	3.89%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-7.392e-02	1.0000	10.0	0.87%	629.4	1.30%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.339e-02	1.0000	34.0	2.96%	1802.3	3.72%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-7.218e-02	1.0000	8.0	0.70%	526.1	1.09%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-6.984e-02	1.0000	156.0	13.59%	7315.9	15.11%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-6.150e-02	1.0000	632.0	55.05%	27728.6	57.29%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-5.247e-02	1.0000	13.0	1.13%	815.4	1.68%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-5.202e-02	1.0000	7.0	0.61%	497.5	1.03%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-4.970e-02	1.0000	216.0	18.82%	10040.1	20.74%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-4.812e-02	1.0000	13.0	1.13%	823.1	1.70%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-4.750e-02	1.0000	160.0	13.94%	7590.0	15.68%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-4.557e-02	1.0000	1.0	0.09%	131.5	0.27%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-4.465e-02	1.0000	48.0	4.18%	2534.4	5.24%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.241e-02	1.0000	366.0	31.88%	16581.0	34.26%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-4.043e-02	1.0000	126.0	10.98%	6113.4	12.63%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.982e-02	1.0000	41.0	3.57%	2220.3	4.59%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.960e-02	1.0000	5.0	0.44%	402.5	0.83%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-3.899e-02	1.0000	5.0	0.44%	403.2	0.83%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-3.569e-02	1.0000	222.0	19.34%	10392.0	21.47%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-2.742e-02	1.0000	31.0	2.70%	1786.3	3.69%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-2.597e-02	1.0000	70.0	6.10%	3648.7	7.54%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.528e-02	1.0000	266.0	23.17%	12407.7	25.63%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-2.345e-02	1.0000	191.0	16.64%	9132.0	18.87%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-2.183e-02	1.0000	262.0	22.82%	12271.6	25.35%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-2.149e-02	1.0000	409.0	35.63%	18628.2	38.49%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-2.101e-02	1.0000	14.0	1.22%	950.9	1.96%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-2.043e-02	1.0000	432.0	37.63%	19626.7	40.55%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.973e-02	1.0000	182.0	15.85%	8773.6	18.13%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.934e-02	1.0000	47.0	4.09%	2607.7	5.39%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-1.837e-02	1.0000	17.0	1.48%	1121.1	2.32%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-1.623e-02	1.0000	486.0	42.33%	21991.1	45.43%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-1.471e-02	1.0000	112.0	9.76%	5683.7	11.74%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.455e-02	1.0000	431.0	37.54%	19679.5	40.66%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-1.424e-02	1.0000	118.0	10.28%	5963.1	12.32%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-4.931e-03	1.0000	389.0	33.89%	18155.7	37.51%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-4.247e-03	1.0000	148.0	12.89%	7555.0	15.61%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-2.844e-03	1.0000	131.0	11.41%	6844.3	14.14%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.005e-03	1.0000	108.0	9.41%	5830.6	12.05%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.312e-03	1.0000	3.0	0.26%	458.3	0.95%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-8.030e-04	1.0000	377.0	32.84%	18036.8	37.26%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-7.610e-04	1.0000	5.0	0.44%	636.3	1.31%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-6.860e-04	1.0000	68.0	5.92%	4056.6	8.38%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-2.080e-04	1.0000	183.0	15.94%	9659.5	19.96%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	72.7	0.15%