Information for 1-ATCGAATGGA (Motif 1)


Reverse Opposite:

p-value:1e-39
log p-value:-9.205e+01
Information Content per bp:1.530
Number of Target Sequences with motif21.0
Percentage of Target Sequences with motif0.43%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets278.5 +/- 158.7bp
Average Position of motif in Background143.2 +/- 84.8bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)8.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0098.1_Zfp410_1/Jaspar

Match Rank:1
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----ATCGAATGGA---
TATTATGGGATGGATAA

PB0028.1_Hbp1_1/Jaspar

Match Rank:2
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATCGAATGGA----
ACTATGAATGAATGAT

PB0068.1_Sox1_1/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATCGAATGGA--
NNNTATTGAATTGNNN

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ATCGAATGGA----
----AATGGAAAAT

PB0040.1_Lef1_1/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----ATCGAATGGA--
NANAGATCAAAGGGNNN

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:6
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----ATCGAATGGA--
NNNAGATCAAAGGANNN

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:7
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--ATCGAATGGA
ACATCAAAGGNA

PB0137.1_Irf3_2/Jaspar

Match Rank:8
Score:0.55
Offset:0
Orientation:forward strand
Alignment:ATCGAATGGA----
GGAGAAAGGTGCGA

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-ATCGAATGGA
NCTGGAATGC-

PB0083.1_Tcf7_1/Jaspar

Match Rank:10
Score:0.54
Offset:-5
Orientation:forward strand
Alignment:-----ATCGAATGGA--
TATAGATCAAAGGAAAA