Information for 19-AGAAAGAGAG (Motif 15)


Reverse Opposite:

p-value:1e-7
log p-value:-1.810e+01
Information Content per bp:1.835
Number of Target Sequences with motif345.0
Percentage of Target Sequences with motif7.00%
Number of Background Sequences with motif2328.4
Percentage of Background Sequences with motif5.16%
Average Position of motif in Targets279.0 +/- 150.2bp
Average Position of motif in Background273.4 +/- 161.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:1
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:AGAAAGAGAG---
-GAAACTGAAACT

IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer

Match Rank:2
Score:0.60
Offset:1
Orientation:forward strand
Alignment:AGAAAGAGAG---
-GAAAGTGAAAGT

MA0442.1_SOX10/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AGAAAGAGAG
ACAAAG----

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGAAAGAGAG
DCYAAAAATAGM-

PB0139.1_Irf5_2/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGAAAGAGAG----
TTGACCGAGAATTCC

MA0050.2_IRF1/Jaspar

Match Rank:6
Score:0.56
Offset:-4
Orientation:reverse strand
Alignment:----AGAAAGAGAG-------
AAANNGAAAGTGAAAGTAAAN

MA0508.1_PRDM1/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:AGAAAGAGAG-----
AGAAAGTGAAAGTGA

MA0497.1_MEF2C/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----AGAAAGAGAG
ATGCTAAAAATAGAA

PB0148.1_Mtf1_2/Jaspar

Match Rank:9
Score:0.55
Offset:-5
Orientation:forward strand
Alignment:-----AGAAAGAGAG
AAATAAGAAAAAAC-

bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer

Match Rank:10
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------AGAAAGAGAG--
WNAGTCADAVTGAAACTN