Information for 13-TAATTCTT (Motif 19)


Reverse Opposite:

p-value:1e-5
log p-value:-1.376e+01
Information Content per bp:1.801
Number of Target Sequences with motif2344.0
Percentage of Target Sequences with motif47.58%
Number of Background Sequences with motif19963.6
Percentage of Background Sequences with motif44.21%
Average Position of motif in Targets274.4 +/- 159.5bp
Average Position of motif in Background274.3 +/- 157.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0075.1_Prrx2/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:TAATTCTT
TAATT---

PB0172.1_Sox1_2/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TAATTCTT----
CTATAATTGTTAGCG

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-TAATTCTT
CTAATT---

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TAATTCTT-----
AAAATTGTTATGAA

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:5
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--TAATTCTT
NYTAATCCYB

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TAATTCTT
TAATCCCN

MF0010.1_Homeobox_class/Jaspar

Match Rank:7
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TAATTCTT
-AATTATT

PB0066.1_Sox17_1/Jaspar

Match Rank:8
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TAATTCTT---
NNATNAATTGTTTNN

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:9
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-TAATTCTT
YTAATCCY-

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----TAATTCTT-----
GGAAAAATTGTTAGGAA