Information for 15-GGCTCACS (Motif 21)


Reverse Opposite:

p-value:1e-5
log p-value:-1.253e+01
Information Content per bp:1.791
Number of Target Sequences with motif1557.0
Percentage of Target Sequences with motif31.61%
Number of Background Sequences with motif12950.6
Percentage of Background Sequences with motif28.68%
Average Position of motif in Targets274.4 +/- 151.4bp
Average Position of motif in Background272.7 +/- 156.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.58
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0153.1_Nr2f2_2/Jaspar

Match Rank:1
Score:0.71
Offset:-6
Orientation:forward strand
Alignment:------GGCTCACS--
CGCGCCGGGTCACGTA

PB0057.1_Rxra_1/Jaspar

Match Rank:2
Score:0.70
Offset:-6
Orientation:reverse strand
Alignment:------GGCTCACS---
NTNNNGGGGTCANGNNN

PB0157.1_Rara_2/Jaspar

Match Rank:3
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGCTCACS--
AGAGCGGGGTCAAGTA

PB0030.1_Hnf4a_1/Jaspar

Match Rank:4
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------GGCTCACS---
CTCCAGGGGTCAATTGA

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GGCTCACS
AGGTCA--

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------GGCTCACS---
GGCGAGGGGTCAAGGGC

MA0117.1_Mafb/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGCTCACS-
-GCTGACGC

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCTCACS
NGCTN---

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--GGCTCACS
NGGGATTA--

MA0477.1_FOSL1/Jaspar

Match Rank:10
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---GGCTCACS
NATGAGTCACC