Information for 20-GCACTCACGC (Motif 23)


Reverse Opposite:

p-value:1e-5
log p-value:-1.192e+01
Information Content per bp:1.948
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif92.8
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets277.1 +/- 172.0bp
Average Position of motif in Background277.9 +/- 172.0bp
Strand Bias (log2 ratio + to - strand density)1.5
Multiplicity (# of sites on avg that occur together)2.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----GCACTCACGC--
AGCGGCACACACGCAA

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCACTCACGC-
-CRCCCACGCA

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCACTCACGC
AGCCACTCAAG-

MA0006.1_Arnt::Ahr/Jaspar

Match Rank:4
Score:0.70
Offset:5
Orientation:reverse strand
Alignment:GCACTCACGC-
-----CACGCA

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--GCACTCACGC
AAGCACTTAA--

MA0472.1_EGR2/Jaspar

Match Rank:6
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GCACTCACGC--
CCCCCGCCCACGCAC

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:7
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-GCACTCACGC-
YCCGCCCACGCN

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:8
Score:0.66
Offset:2
Orientation:forward strand
Alignment:GCACTCACGC--
--TBGCACGCAA

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:9
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GCACTCACGC
AASCACTCAA--

MA0122.1_Nkx3-2/Jaspar

Match Rank:10
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-GCACTCACGC
NCCACTTAN--