Information for 22-GTCCGAGGTC (Motif 25)


Reverse Opposite:

p-value:1e-3
log p-value:-8.595e+00
Information Content per bp:1.857
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.30%
Number of Background Sequences with motif45.8
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets306.3 +/- 116.0bp
Average Position of motif in Background295.1 +/- 137.5bp
Strand Bias (log2 ratio + to - strand density)3.1
Multiplicity (# of sites on avg that occur together)2.53
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0504.1_NR2C2/Jaspar

Match Rank:1
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCCGAGGTC-
AGGGGTCAGAGGTCA

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---GTCCGAGGTC-
GAGGTCAAAGGTCA

MA0592.1_ESRRA/Jaspar

Match Rank:3
Score:0.63
Offset:2
Orientation:forward strand
Alignment:GTCCGAGGTC---
--CCAAGGTCACA

MA0141.2_Esrrb/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GTCCGAGGTC-
AGCTCAAGGTCA

MA0505.1_Nr5a2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GTCCGAGGTC---
AAGTTCAAGGTCAGC

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:6
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:GTCCGAGGTC--
--TCAAGGTCAN

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GTCCGAGGTC--
--CAAAGGTCAG

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCCGAGGTC-
-NTCAAGGTCA

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GTCCGAGGTC-
-BTCAAGGTCA

PB0014.1_Esrra_1/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GTCCGAGGTC------
TATTCAAGGTCATGCGA