Information for 24-TGAACAAA (Motif 27)


Reverse Opposite:

p-value:1e-3
log p-value:-7.441e+00
Information Content per bp:1.829
Number of Target Sequences with motif2104.0
Percentage of Target Sequences with motif42.71%
Number of Background Sequences with motif18254.2
Percentage of Background Sequences with motif40.43%
Average Position of motif in Targets276.3 +/- 156.7bp
Average Position of motif in Background275.8 +/- 159.2bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0071.1_Sox4_1/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TGAACAAA------
AGAAGAACAAAGGACTA

PB0061.1_Sox11_1/Jaspar

Match Rank:2
Score:0.74
Offset:-3
Orientation:forward strand
Alignment:---TGAACAAA------
ATAAGAACAAAGGACTA

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----TGAACAAA--
TACTGGAAAAAAAA

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:4
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:TGAACAAA--
GGAACAAAGR

PB0017.1_Foxj3_1/Jaspar

Match Rank:5
Score:0.72
Offset:-6
Orientation:forward strand
Alignment:------TGAACAAA---
AAAAAGTAAACAAACAC

PB0016.1_Foxj1_1/Jaspar

Match Rank:6
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----TGAACAAA----
AAAGTAAACAAAAATT

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TGAACAAA
--AACAAT

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TGAACAAA---
-GAACAATGGN

PB0145.1_Mafb_2/Jaspar

Match Rank:9
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TGAACAAA---
CAATTGCAAAAATAT

PB0018.1_Foxk1_1/Jaspar

Match Rank:10
Score:0.68
Offset:-6
Orientation:forward strand
Alignment:------TGAACAAA---
AAAATGTAAACAAACAG