Information for 11-AGGCGAGYATCY (Motif 4)


Reverse Opposite:

p-value:1e-18
log p-value:-4.198e+01
Information Content per bp:1.806
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets293.4 +/- 169.3bp
Average Position of motif in Background317.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.73
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-AGGCGAGYATCY
AAGGCAAGTGT--

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AGGCGAGYATCY
CWGGCGGGAA---

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.54
Offset:-4
Orientation:forward strand
Alignment:----AGGCGAGYATCY
ATAAAGGCGCGCGAT-

PB0180.1_Sp4_2/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGGCGAGYATCY
CAAAGGCGTGGCCAG

PB0095.1_Zfp161_1/Jaspar

Match Rank:5
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--AGGCGAGYATCY--
TGGCGCGCGCGCCTGA

POL006.1_BREu/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:AGGCGAGYATCY
-GGCGCGCT---

MA0103.2_ZEB1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-AGGCGAGYATCY
CAGGTGAGG----

PB0009.1_E2F3_1/Jaspar

Match Rank:8
Score:0.53
Offset:-4
Orientation:forward strand
Alignment:----AGGCGAGYATCY
ATAAGGGCGCGCGAT-

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:9
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:AGGCGAGYATCY
TGGCGGGAAAHB

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.51
Offset:1
Orientation:forward strand
Alignment:AGGCGAGYATCY
-GGCGGGAAAH-