Information for 11-TCCCGACTAA (Motif 6)


Reverse Opposite:

p-value:1e-12
log p-value:-2.965e+01
Information Content per bp:1.673
Number of Target Sequences with motif1463.0
Percentage of Target Sequences with motif29.70%
Number of Background Sequences with motif11329.4
Percentage of Background Sequences with motif25.09%
Average Position of motif in Targets278.4 +/- 160.9bp
Average Position of motif in Background272.3 +/- 155.3bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.54
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0471.1_E2F6/Jaspar

Match Rank:1
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCCCGACTAA
NCTTCCCGCCC--

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TCCCGACTAA
TTCCCGCCWG-

MA0470.1_E2F4/Jaspar

Match Rank:3
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TCCCGACTAA
NNTTCCCGCCC--

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:4
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TCCCGACTAA
NYTTCCCGCC---

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----TCCCGACTAA
VDTTTCCCGCCA--

MA0056.1_MZF1_1-4/Jaspar

Match Rank:6
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:TCCCGACTAA
TCCCCA----

MA0132.1_Pdx1/Jaspar

Match Rank:7
Score:0.54
Offset:6
Orientation:forward strand
Alignment:TCCCGACTAA--
------CTAATT

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:TCCCGACTAA
TGCTGACTCA

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-TCCCGACTAA----
ACCGTGACTAATTNN

PB0041.1_Mafb_1/Jaspar

Match Rank:10
Score:0.52
Offset:-5
Orientation:forward strand
Alignment:-----TCCCGACTAA--
AAATTTGCTGACTTAGA