Information for 3-TKAGKATA (Motif 8)


Reverse Opposite:

p-value:1e-10
log p-value:-2.442e+01
Information Content per bp:1.782
Number of Target Sequences with motif1260.0
Percentage of Target Sequences with motif25.58%
Number of Background Sequences with motif9769.5
Percentage of Background Sequences with motif21.64%
Average Position of motif in Targets280.2 +/- 163.8bp
Average Position of motif in Background275.3 +/- 157.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0124.1_NKX3-1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:TKAGKATA
TAAGTAT-

PB0096.1_Zfp187_1/Jaspar

Match Rank:2
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---TKAGKATA---
TTATTAGTACATAN

MA0132.1_Pdx1/Jaspar

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TKAGKATA
AATTAG----

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TKAGKATA----
-AAGGATATNTN

PH0144.1_Pou2f2/Jaspar

Match Rank:5
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TKAGKATA---
TNTAATTTGCATANNN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----TKAGKATA
BCMATTAG----

PH0145.1_Pou2f3/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TKAGKATA---
TNTAATTTGCATACNA

PH0068.1_Hoxc13/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----TKAGKATA---
NAATTTTACGAGNTNN

PH0097.1_Lhx6_2/Jaspar

Match Rank:9
Score:0.55
Offset:-9
Orientation:reverse strand
Alignment:---------TKAGKATA
NNNCGCTAATTAGNNGA

PH0048.1_Hoxa13/Jaspar

Match Rank:10
Score:0.55
Offset:-5
Orientation:reverse strand
Alignment:-----TKAGKATA---
ANATTTTACGAGNNNN