Information for 4-GCCCCCGT (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.429e+01
Information Content per bp:1.866
Number of Target Sequences with motif254.0
Percentage of Target Sequences with motif5.16%
Number of Background Sequences with motif1509.6
Percentage of Background Sequences with motif3.34%
Average Position of motif in Targets270.9 +/- 162.2bp
Average Position of motif in Background276.9 +/- 150.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0010.1_Egr1_1/Jaspar

Match Rank:1
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---GCCCCCGT---
TCCGCCCCCGCATT

PB0076.1_Sp4_1/Jaspar

Match Rank:2
Score:0.67
Offset:-6
Orientation:forward strand
Alignment:------GCCCCCGT---
GGTCCCGCCCCCTTCTC

PB0200.1_Zfp187_2/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GCCCCCGT------
GAGCCCTTGTCCCTAA

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.65
Offset:-6
Orientation:forward strand
Alignment:------GCCCCCGT---
TGTCGTGACCCCTTAAT

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.64
Offset:-6
Orientation:reverse strand
Alignment:------GCCCCCGT---
NNANTTGACCCCTNNNN

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:6
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GCCCCCGT-
-NCCACGTG

PB0092.1_Zbtb7b_1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GCCCCCGT-----
AAGCCCCCCAAAAAT

n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:GCCCCCGT--
NNCCACGTGG

MA0104.3_Mycn/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GCCCCCGT-
-GCCACGTG

MA0162.2_EGR1/Jaspar

Match Rank:10
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----GCCCCCGT-
CCCCCGCCCCCGCC