Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 4931)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 45138)	% of Background Sequences with Motif
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e-5	-1.208e+01	0.0015	215.0	4.36%	1444.4	3.20%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e-2	-5.438e+00	0.5741	147.0	2.98%	1077.3	2.39%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e-1	-4.588e+00	0.8955	733.0	14.88%	6196.4	13.72%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-1	-4.465e+00	0.8955	1214.0	24.64%	10502.1	23.26%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.988e+00	0.9789	208.0	4.22%	1646.7	3.65%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e-1	-3.652e+00	1.0000	1933.0	39.24%	17106.4	37.89%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.615e+00	1.0000	428.0	8.69%	3580.6	7.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-1	-3.610e+00	1.0000	2231.0	45.29%	19830.1	43.92%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-1	-3.185e+00	1.0000	435.0	8.83%	3675.1	8.14%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e-1	-2.870e+00	1.0000	85.0	1.73%	651.2	1.44%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e-1	-2.800e+00	1.0000	14.0	0.28%	80.4	0.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e-1	-2.709e+00	1.0000	331.0	6.72%	2795.2	6.19%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-1	-2.705e+00	1.0000	113.0	2.29%	895.8	1.98%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-2.629e+00	1.0000	768.0	15.59%	6700.7	14.84%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-1	-2.528e+00	1.0000	1261.0	25.60%	11163.6	24.72%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.410e+00	1.0000	221.0	4.49%	1849.1	4.10%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e-1	-2.343e+00	1.0000	24.0	0.49%	164.2	0.36%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e-1	-2.323e+00	1.0000	2032.0	41.25%	18213.8	40.34%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.288e+00	1.0000	4398.0	89.28%	40050.6	88.70%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-2.242e+00	1.0000	1186.0	24.08%	10527.7	23.32%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-2.218e+00	1.0000	1664.0	33.78%	14875.7	32.94%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-2.137e+00	1.0000	714.0	14.49%	6276.0	13.90%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-2.109e+00	1.0000	3439.0	69.81%	31171.0	69.03%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-2.012e+00	1.0000	99.0	2.01%	809.0	1.79%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.965e+00	1.0000	345.0	7.00%	2985.8	6.61%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.962e+00	1.0000	795.0	16.14%	7031.5	15.57%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.931e+00	1.0000	914.0	18.55%	8112.2	17.97%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-1.924e+00	1.0000	714.0	14.49%	6305.4	13.96%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.900e+00	1.0000	2781.0	56.46%	25155.0	55.71%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.811e+00	1.0000	1874.0	38.04%	16868.6	37.36%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-1.789e+00	1.0000	103.0	2.09%	855.3	1.89%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-1.671e+00	1.0000	3246.0	65.90%	29478.6	65.29%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.654e+00	1.0000	1331.0	27.02%	11948.3	26.46%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.634e+00	1.0000	48.0	0.97%	385.7	0.85%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-1.629e+00	1.0000	1224.0	24.85%	10979.4	24.32%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.569e+00	1.0000	1071.0	21.74%	9599.1	21.26%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.535e+00	1.0000	445.0	9.03%	3932.8	8.71%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-1.524e+00	1.0000	533.0	10.82%	4728.6	10.47%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-1.504e+00	1.0000	1342.0	27.24%	12079.9	26.75%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-1.473e+00	1.0000	1266.0	25.70%	11393.3	25.23%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.455e+00	1.0000	65.0	1.32%	541.5	1.20%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.437e+00	1.0000	394.0	8.00%	3485.2	7.72%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-1.395e+00	1.0000	198.0	4.02%	1727.9	3.83%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.364e+00	1.0000	1026.0	20.83%	9230.6	20.44%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-1.360e+00	1.0000	415.0	8.42%	3685.2	8.16%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.343e+00	1.0000	428.0	8.69%	3805.5	8.43%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.336e+00	1.0000	240.0	4.87%	2111.0	4.68%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-1.282e+00	1.0000	1198.0	24.32%	10815.4	23.95%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.267e+00	1.0000	102.0	2.07%	880.3	1.95%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.267e+00	1.0000	102.0	2.07%	880.3	1.95%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-1.263e+00	1.0000	634.0	12.87%	5685.3	12.59%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-1.238e+00	1.0000	43.0	0.87%	360.0	0.80%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-1.208e+00	1.0000	430.0	8.73%	3843.9	8.51%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-1.208e+00	1.0000	2492.0	50.59%	22668.0	50.20%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-1.207e+00	1.0000	486.0	9.87%	4351.7	9.64%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.161e+00	1.0000	617.0	12.53%	5549.2	12.29%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-1.158e+00	1.0000	171.0	3.47%	1508.7	3.34%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.140e+00	1.0000	12.0	0.24%	93.1	0.21%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-1.135e+00	1.0000	1106.0	22.45%	10010.1	22.17%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-1.134e+00	1.0000	316.0	6.41%	2821.3	6.25%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.122e+00	1.0000	528.0	10.72%	4747.3	10.51%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.086e+00	1.0000	334.0	6.78%	2991.1	6.62%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-1.081e+00	1.0000	63.0	1.28%	545.8	1.21%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.068e+00	1.0000	2924.0	59.36%	26670.4	59.07%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.061e+00	1.0000	53.0	1.08%	457.5	1.01%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-1.034e+00	1.0000	4048.0	82.18%	37008.3	81.96%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.013e+00	1.0000	52.0	1.06%	451.6	1.00%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.004e+00	1.0000	70.0	1.42%	613.7	1.36%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-9.940e-01	1.0000	466.0	9.46%	4206.7	9.32%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.730e-01	1.0000	228.0	4.63%	2045.3	4.53%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-9.710e-01	1.0000	1315.0	26.70%	11963.0	26.49%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-9.194e-01	1.0000	42.0	0.85%	367.1	0.81%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-9.058e-01	1.0000	160.0	3.25%	1437.0	3.18%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-8.962e-01	1.0000	213.0	4.32%	1919.3	4.25%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-8.856e-01	1.0000	990.0	20.10%	9014.7	19.96%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-8.774e-01	1.0000	2271.0	46.10%	20744.9	45.94%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-8.691e-01	1.0000	2143.0	43.50%	19574.5	43.35%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-8.586e-01	1.0000	2207.0	44.80%	20164.1	44.66%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-8.280e-01	1.0000	367.0	7.45%	3334.9	7.39%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-8.047e-01	1.0000	1862.0	37.80%	17022.8	37.70%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-7.979e-01	1.0000	2228.0	45.23%	20378.2	45.13%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-7.293e-01	1.0000	757.0	15.37%	6925.2	15.34%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.278e-01	1.0000	698.0	14.17%	6385.5	14.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-7.027e-01	1.0000	1343.0	27.26%	12303.4	27.25%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-6.957e-01	1.0000	378.0	7.67%	3461.1	7.67%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-6.869e-01	1.0000	289.0	5.87%	2647.4	5.86%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-6.715e-01	1.0000	359.0	7.29%	3292.9	7.29%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-6.711e-01	1.0000	1466.0	29.76%	13443.0	29.77%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-6.711e-01	1.0000	39.0	0.79%	356.9	0.79%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-6.660e-01	1.0000	80.0	1.62%	733.6	1.62%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-6.624e-01	1.0000	302.0	6.13%	2771.2	6.14%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-6.598e-01	1.0000	98.0	1.99%	899.7	1.99%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.353e-01	1.0000	532.0	10.80%	4888.2	10.83%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-6.243e-01	1.0000	50.0	1.02%	461.3	1.02%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-6.241e-01	1.0000	319.0	6.48%	2935.7	6.50%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-6.182e-01	1.0000	218.0	4.43%	2008.8	4.45%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-6.016e-01	1.0000	243.0	4.93%	2241.0	4.96%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.997e-01	1.0000	148.0	3.00%	1367.1	3.03%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-5.943e-01	1.0000	704.0	14.29%	6479.9	14.35%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-5.915e-01	1.0000	1309.0	26.57%	12033.5	26.65%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-5.859e-01	1.0000	1003.0	20.36%	9227.3	20.44%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-5.820e-01	1.0000	283.0	5.75%	2613.9	5.79%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-5.769e-01	1.0000	31.0	0.63%	289.7	0.64%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-5.717e-01	1.0000	3.0	0.06%	27.4	0.06%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.702e-01	1.0000	295.0	5.99%	2726.6	6.04%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-5.571e-01	1.0000	91.0	1.85%	847.2	1.88%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-5.502e-01	1.0000	920.0	18.68%	8478.0	18.78%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-5.482e-01	1.0000	1216.0	24.69%	11197.6	24.80%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-5.323e-01	1.0000	72.0	1.46%	674.2	1.49%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-5.281e-01	1.0000	146.0	2.96%	1360.8	3.01%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-5.207e-01	1.0000	2292.0	46.53%	21081.3	46.69%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-5.164e-01	1.0000	316.0	6.41%	2933.0	6.50%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-5.131e-01	1.0000	121.0	2.46%	1131.7	2.51%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-5.014e-01	1.0000	51.0	1.04%	482.8	1.07%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-5.009e-01	1.0000	931.0	18.90%	8598.5	19.04%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-4.983e-01	1.0000	56.0	1.14%	529.0	1.17%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.775e-01	1.0000	95.0	1.93%	896.0	1.98%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.515e-01	1.0000	797.0	16.18%	7385.4	16.36%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-4.514e-01	1.0000	899.0	18.25%	8324.8	18.44%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-4.490e-01	1.0000	13.0	0.26%	128.3	0.28%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-4.406e-01	1.0000	255.0	5.18%	2387.5	5.29%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-4.263e-01	1.0000	60.0	1.22%	575.2	1.27%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-3.967e-01	1.0000	463.0	9.40%	4325.3	9.58%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-3.898e-01	1.0000	187.0	3.80%	1768.9	3.92%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-3.891e-01	1.0000	3177.0	64.49%	29258.6	64.80%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-3.816e-01	1.0000	89.0	1.81%	854.9	1.89%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-3.673e-01	1.0000	351.0	7.13%	3298.6	7.31%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-3.655e-01	1.0000	222.0	4.51%	2100.5	4.65%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-3.646e-01	1.0000	337.0	6.84%	3169.1	7.02%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-3.536e-01	1.0000	2719.0	55.20%	25088.9	55.56%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-3.324e-01	1.0000	39.0	0.79%	388.1	0.86%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.287e-01	1.0000	215.0	4.36%	2046.0	4.53%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.262e-01	1.0000	240.0	4.87%	2279.4	5.05%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-3.204e-01	1.0000	1020.0	20.71%	9503.5	21.05%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.127e-01	1.0000	75.0	1.52%	734.4	1.63%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.098e-01	1.0000	717.0	14.56%	6711.5	14.86%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-3.005e-01	1.0000	887.0	18.01%	8287.5	18.35%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-2.976e-01	1.0000	335.0	6.80%	3174.7	7.03%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.932e-01	1.0000	535.0	10.86%	5034.6	11.15%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-2.812e-01	1.0000	1509.0	30.63%	14033.1	31.08%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-2.778e-01	1.0000	1611.0	32.70%	14974.2	33.16%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.656e-01	1.0000	195.0	3.96%	1877.1	4.16%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-2.642e-01	1.0000	591.0	12.00%	5568.8	12.33%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-2.588e-01	1.0000	2066.0	41.94%	19170.4	42.46%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.470e-01	1.0000	246.0	4.99%	2362.6	5.23%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-2.447e-01	1.0000	210.0	4.26%	2025.3	4.49%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-2.378e-01	1.0000	1660.0	33.70%	15456.5	34.23%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.329e-01	1.0000	2028.0	41.17%	18843.3	41.73%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-2.308e-01	1.0000	274.0	5.56%	2631.1	5.83%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-2.300e-01	1.0000	3311.0	67.21%	30592.7	67.75%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-2.276e-01	1.0000	1521.0	30.88%	14185.6	31.42%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-2.264e-01	1.0000	1540.0	31.26%	14361.2	31.81%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.260e-01	1.0000	687.0	13.95%	6481.3	14.35%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.256e-01	1.0000	463.0	9.40%	4399.5	9.74%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-2.249e-01	1.0000	1007.0	20.44%	9445.2	20.92%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.237e-01	1.0000	657.0	13.34%	6204.8	13.74%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-2.193e-01	1.0000	2517.0	51.10%	23341.1	51.69%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-2.176e-01	1.0000	859.0	17.44%	8081.6	17.90%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.110e-01	1.0000	140.0	2.84%	1376.3	3.05%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.056e-01	1.0000	159.0	3.23%	1558.1	3.45%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-2.052e-01	1.0000	908.0	18.43%	8544.8	18.92%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.001e-01	1.0000	327.0	6.64%	3142.9	6.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-1.993e-01	1.0000	794.0	16.12%	7492.8	16.59%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.963e-01	1.0000	1443.0	29.29%	13494.9	29.89%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.932e-01	1.0000	24.0	0.49%	261.9	0.58%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-1.887e-01	1.0000	790.0	16.04%	7463.8	16.53%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.883e-01	1.0000	497.0	10.09%	4738.4	10.49%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.857e-01	1.0000	158.0	3.21%	1556.2	3.45%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.826e-01	1.0000	12.0	0.24%	140.2	0.31%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.784e-01	1.0000	204.0	4.14%	1995.5	4.42%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.754e-01	1.0000	296.0	6.01%	2864.6	6.34%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-1.744e-01	1.0000	845.0	17.15%	7985.3	17.68%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-1.737e-01	1.0000	724.0	14.70%	6862.4	15.20%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.700e-01	1.0000	956.0	19.41%	9018.3	19.97%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-1.692e-01	1.0000	195.0	3.96%	1914.3	4.24%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-1.678e-01	1.0000	457.0	9.28%	4378.7	9.70%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.601e-01	1.0000	101.0	2.05%	1021.7	2.26%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.560e-01	1.0000	974.0	19.77%	9198.3	20.37%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.520e-01	1.0000	1372.0	27.85%	12884.9	28.54%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.502e-01	1.0000	619.0	12.57%	5904.7	13.08%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.436e-01	1.0000	1061.0	21.54%	10017.8	22.19%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-1.417e-01	1.0000	1534.0	31.14%	14391.4	31.87%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.413e-01	1.0000	424.0	8.61%	4088.3	9.05%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.404e-01	1.0000	177.0	3.59%	1757.2	3.89%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-1.403e-01	1.0000	162.0	3.29%	1614.2	3.57%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-1.347e-01	1.0000	2022.0	41.05%	18893.4	41.84%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.302e-01	1.0000	1663.0	33.76%	15595.2	34.54%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.234e-01	1.0000	195.0	3.96%	1939.0	4.29%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-1.190e-01	1.0000	928.0	18.84%	8811.8	19.52%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.183e-01	1.0000	1391.0	28.24%	13102.0	29.02%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.179e-01	1.0000	114.0	2.31%	1164.3	2.58%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.103e-01	1.0000	68.0	1.38%	719.1	1.59%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.064e-01	1.0000	2579.0	52.35%	24045.5	53.25%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-1.023e-01	1.0000	931.0	18.90%	8860.2	19.62%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-1.017e-01	1.0000	808.0	16.40%	7716.6	17.09%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-1.004e-01	1.0000	121.0	2.46%	1241.6	2.75%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-9.893e-02	1.0000	976.0	19.81%	9283.8	20.56%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-9.633e-02	1.0000	51.0	1.04%	556.7	1.23%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.610e-02	1.0000	12.0	0.24%	155.0	0.34%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-9.520e-02	1.0000	272.0	5.52%	2691.9	5.96%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-9.510e-02	1.0000	334.0	6.78%	3279.6	7.26%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-9.398e-02	1.0000	292.0	5.93%	2882.4	6.38%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-9.394e-02	1.0000	2520.0	51.16%	23526.2	52.10%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.900e-02	1.0000	250.0	5.08%	2487.9	5.51%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-8.838e-02	1.0000	1188.0	24.12%	11267.9	24.95%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-8.678e-02	1.0000	933.0	18.94%	8901.5	19.71%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-8.606e-02	1.0000	409.0	8.30%	3997.7	8.85%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-8.464e-02	1.0000	75.0	1.52%	800.1	1.77%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-8.425e-02	1.0000	244.0	4.95%	2434.9	5.39%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.813e-02	1.0000	1748.0	35.49%	16463.0	36.46%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-7.664e-02	1.0000	5.0	0.10%	78.4	0.17%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-7.454e-02	1.0000	8.0	0.16%	114.4	0.25%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-7.272e-02	1.0000	876.0	17.78%	8393.8	18.59%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-6.667e-02	1.0000	238.0	4.83%	2394.5	5.30%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-6.635e-02	1.0000	1487.0	30.19%	14078.2	31.18%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-6.379e-02	1.0000	308.0	6.25%	3066.0	6.79%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-5.857e-02	1.0000	576.0	11.69%	5609.8	12.42%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.654e-02	1.0000	723.0	14.68%	6993.6	15.49%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-5.320e-02	1.0000	68.0	1.38%	750.0	1.66%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-5.287e-02	1.0000	727.0	14.76%	7038.5	15.59%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-5.085e-02	1.0000	84.0	1.71%	912.1	2.02%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-4.962e-02	1.0000	1519.0	30.84%	14416.8	31.93%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-4.725e-02	1.0000	860.0	17.46%	8296.3	18.37%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-4.708e-02	1.0000	260.0	5.28%	2630.5	5.83%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.339e-02	1.0000	374.0	7.59%	3726.4	8.25%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-4.085e-02	1.0000	903.0	18.33%	8715.5	19.30%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-4.009e-02	1.0000	768.0	15.59%	7453.8	16.51%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-3.934e-02	1.0000	339.0	6.88%	3400.5	7.53%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-3.694e-02	1.0000	301.0	6.11%	3041.5	6.74%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-3.388e-02	1.0000	950.0	19.29%	9176.1	20.32%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-3.255e-02	1.0000	304.0	6.17%	3079.9	6.82%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-3.065e-02	1.0000	222.0	4.51%	2292.6	5.08%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.999e-02	1.0000	889.0	18.05%	8619.6	19.09%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-2.909e-02	1.0000	1533.0	31.12%	14618.8	32.38%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-2.906e-02	1.0000	66.0	1.34%	753.9	1.67%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.821e-02	1.0000	663.0	13.46%	6502.1	14.40%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-2.462e-02	1.0000	1712.0	34.75%	16296.1	36.09%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-2.368e-02	1.0000	719.0	14.60%	7047.0	15.61%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-2.232e-02	1.0000	503.0	10.21%	5009.9	11.10%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.016e-02	1.0000	2459.0	49.92%	23196.2	51.37%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-1.955e-02	1.0000	391.0	7.94%	3951.9	8.75%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.843e-02	1.0000	1688.0	34.27%	16111.7	35.68%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-1.674e-02	1.0000	645.0	13.09%	6382.0	14.13%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-1.366e-02	1.0000	62.0	1.26%	738.4	1.64%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.275e-02	1.0000	1130.0	22.94%	10967.9	24.29%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.076e-02	1.0000	288.0	5.85%	2998.1	6.64%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-8.294e-03	1.0000	682.0	13.84%	6794.0	15.05%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-8.240e-03	1.0000	3396.0	68.94%	31831.6	70.50%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-7.389e-03	1.0000	1165.0	23.65%	11351.1	25.14%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-6.995e-03	1.0000	71.0	1.44%	854.9	1.89%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-6.421e-03	1.0000	1021.0	20.73%	10015.4	22.18%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-6.237e-03	1.0000	1055.0	21.42%	10337.1	22.89%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.743e-03	1.0000	641.0	13.01%	6467.5	14.32%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-3.507e-03	1.0000	108.0	2.19%	1262.1	2.80%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-3.428e-03	1.0000	3273.0	66.44%	30810.2	68.23%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.656e-03	1.0000	406.0	8.24%	4231.8	9.37%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.424e-03	1.0000	295.0	5.99%	3152.3	6.98%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-1.139e-03	1.0000	1429.0	29.01%	13997.5	31.00%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-1.131e-03	1.0000	1249.0	25.36%	12313.7	27.27%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-8.480e-04	1.0000	1473.0	29.90%	14434.5	31.97%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-5.620e-04	1.0000	732.0	14.86%	7474.7	16.55%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-3.400e-04	1.0000	613.0	12.44%	6363.3	14.09%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-2.230e-04	1.0000	443.0	8.99%	4734.0	10.48%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.800e-05	1.0000	454.0	9.22%	4968.5	11.00%